Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29928 | 5' | -51.7 | NC_006273.1 | + | 50589 | 0.66 | 0.99712 |
Target: 5'- -gACACGGcCGGCAUGUacgaaUgCGUGCUg -3' miRNA: 3'- agUGUGCC-GUUGUACAca---AgGCACGA- -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 39699 | 0.66 | 0.99712 |
Target: 5'- aCACGCGGaCGGCuccGUcgUCCGUGUg -3' miRNA: 3'- aGUGUGCC-GUUGua-CAcaAGGCACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 116615 | 0.66 | 0.995388 |
Target: 5'- aCAUggACGGCGACGUGcGUaCCGcgGCa -3' miRNA: 3'- aGUG--UGCCGUUGUACaCAaGGCa-CGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 234591 | 0.66 | 0.99712 |
Target: 5'- aCACGCGGaCGGCuccGUcgUCCGUGUg -3' miRNA: 3'- aGUGUGCC-GUUGua-CAcaAGGCACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 78347 | 0.66 | 0.996616 |
Target: 5'- gCACACGGcCGACG-GUGguuUCCGcGCc -3' miRNA: 3'- aGUGUGCC-GUUGUaCACa--AGGCaCGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 188764 | 0.66 | 0.995388 |
Target: 5'- aCACGauaGGCAGCGUGgucgGcUCCGUcgGCg -3' miRNA: 3'- aGUGUg--CCGUUGUACa---CaAGGCA--CGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 144223 | 0.66 | 0.99465 |
Target: 5'- -gGCACGGCGgcucggacgacuACGUGUGgcucagCCGguUGCUg -3' miRNA: 3'- agUGUGCCGU------------UGUACACaa----GGC--ACGA- -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 234494 | 0.67 | 0.993819 |
Target: 5'- -gGCGCGGCGACAUG----CCGuUGCg -3' miRNA: 3'- agUGUGCCGUUGUACacaaGGC-ACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 70695 | 0.67 | 0.990691 |
Target: 5'- gCGCGCGGCAACucgagaugGUGUacCCG-GCa -3' miRNA: 3'- aGUGUGCCGUUGua------CACAa-GGCaCGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 115555 | 0.67 | 0.989409 |
Target: 5'- cCGCACGGCucACcacUGggCCGUGCg -3' miRNA: 3'- aGUGUGCCGu-UGuacACaaGGCACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 39601 | 0.67 | 0.993819 |
Target: 5'- -gGCGCGGCGACAUG----CCGuUGCg -3' miRNA: 3'- agUGUGCCGUUGUACacaaGGC-ACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 64900 | 0.67 | 0.993819 |
Target: 5'- -uGgACGGCuACAUGUG-UCCGgGCa -3' miRNA: 3'- agUgUGCCGuUGUACACaAGGCaCGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 125525 | 0.67 | 0.992888 |
Target: 5'- gUCAgACGGC-ACggGUuuucgaugaguuGUUCCGUGCc -3' miRNA: 3'- -AGUgUGCCGuUGuaCA------------CAAGGCACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 114310 | 0.68 | 0.982858 |
Target: 5'- gUUACGCGGCcGCccGUG-UCCGUGa- -3' miRNA: 3'- -AGUGUGCCGuUGuaCACaAGGCACga -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 150147 | 0.68 | 0.980822 |
Target: 5'- -gGCACGGCGACG-GUGUcuccUCCGU-CUu -3' miRNA: 3'- agUGUGCCGUUGUaCACA----AGGCAcGA- -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 217199 | 0.68 | 0.987993 |
Target: 5'- aCGCAgGGCAguuccugcgccuGCuugGUGUUUCGUGUUa -3' miRNA: 3'- aGUGUgCCGU------------UGua-CACAAGGCACGA- -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 71849 | 0.69 | 0.976218 |
Target: 5'- aCACACGGCcggggaggAGCAgcugGUGUUUCGacUGCg -3' miRNA: 3'- aGUGUGCCG--------UUGUa---CACAAGGC--ACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 52942 | 0.69 | 0.970851 |
Target: 5'- -aACugGGCAACGaaUGcUGUccUCCGUGUg -3' miRNA: 3'- agUGugCCGUUGU--AC-ACA--AGGCACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 197672 | 0.7 | 0.964667 |
Target: 5'- cUACGCGGCGACAgcUGcUuuGUGCa -3' miRNA: 3'- aGUGUGCCGUUGUacACaAggCACGa -5' |
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29928 | 5' | -51.7 | NC_006273.1 | + | 104525 | 0.7 | 0.964667 |
Target: 5'- gUCGCGCGGCAgugACAgcuUGUGacCCGcGCUc -3' miRNA: 3'- -AGUGUGCCGU---UGU---ACACaaGGCaCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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