Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29929 | 3' | -57.5 | NC_006273.1 | + | 1638 | 0.66 | 0.938321 |
Target: 5'- -aCCGGcuGGGCgUGGGCACCCcGcGCg -3' miRNA: 3'- agGGCU--UCUGgACCUGUGGGaCuCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 166999 | 0.66 | 0.938321 |
Target: 5'- cUCuuGAGGGCCUGGAaagcgUugCCgcacGAGgCg -3' miRNA: 3'- -AGggCUUCUGGACCU-----GugGGa---CUCgG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 196531 | 0.66 | 0.938321 |
Target: 5'- -aCCGGcuGGGCgUGGGCACCCcGcGCg -3' miRNA: 3'- agGGCU--UCUGgACCUGUGGGaCuCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 64771 | 0.66 | 0.938321 |
Target: 5'- gCCgCGAAGGCCU--ACGCCgUGGGgCa -3' miRNA: 3'- aGG-GCUUCUGGAccUGUGGgACUCgG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 199491 | 0.66 | 0.938321 |
Target: 5'- cUCCCGcuGugCUGGcCGCCgCUGcacGGCa -3' miRNA: 3'- -AGGGCuuCugGACCuGUGG-GAC---UCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 152844 | 0.66 | 0.938321 |
Target: 5'- aCCUcauGAGcGGCCUGGGCGCCgCgggaaaGGCCg -3' miRNA: 3'- aGGG---CUU-CUGGACCUGUGG-Gac----UCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 205397 | 0.66 | 0.933636 |
Target: 5'- uUCCaCGAGGA--UGGGCugCCgGuGCCu -3' miRNA: 3'- -AGG-GCUUCUggACCUGugGGaCuCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 31794 | 0.66 | 0.933636 |
Target: 5'- cCCCGGAGugCcucgUGGAgACCaCcGaAGCCg -3' miRNA: 3'- aGGGCUUCugG----ACCUgUGG-GaC-UCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 136085 | 0.66 | 0.928733 |
Target: 5'- cUCCGAcGacGCCgaGGACGCCgUGGGCg -3' miRNA: 3'- aGGGCUuC--UGGa-CCUGUGGgACUCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 185904 | 0.66 | 0.92361 |
Target: 5'- aCCgCGgcGACgUGGAgAgCCUGucGGCCg -3' miRNA: 3'- aGG-GCuuCUGgACCUgUgGGAC--UCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 200820 | 0.66 | 0.92361 |
Target: 5'- gCUCGAgucGGACCUc-GCugUCUGGGCCg -3' miRNA: 3'- aGGGCU---UCUGGAccUGugGGACUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 198622 | 0.66 | 0.92361 |
Target: 5'- cCUCGgcGugCUcaGGcCACCCgccgGAGCCc -3' miRNA: 3'- aGGGCuuCugGA--CCuGUGGGa---CUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 24069 | 0.66 | 0.92361 |
Target: 5'- gCuuGGAuGACCUGGuuaucgucacGCGCCaccgGGGCCa -3' miRNA: 3'- aGggCUU-CUGGACC----------UGUGGga--CUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 91119 | 0.66 | 0.920431 |
Target: 5'- aCCUGccGAUagUUGGGCGCCaaauccagcaaccggCUGAGCCa -3' miRNA: 3'- aGGGCuuCUG--GACCUGUGG---------------GACUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 120674 | 0.66 | 0.918268 |
Target: 5'- gUCCCaGAAGAacuCCUGGuACuucagauucugACCCUGAaccguaGCCa -3' miRNA: 3'- -AGGG-CUUCU---GGACC-UG-----------UGGGACU------CGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 76594 | 0.66 | 0.918268 |
Target: 5'- gCCCGGAGGCgaCUcGGACuaucacGgCCUGAGCg -3' miRNA: 3'- aGGGCUUCUG--GA-CCUG------UgGGACUCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 48077 | 0.66 | 0.917722 |
Target: 5'- cUCCGcGGACCUGGAgcagcCGCCCcGGcaacgacGCCg -3' miRNA: 3'- aGGGCuUCUGGACCU-----GUGGGaCU-------CGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 182613 | 0.66 | 0.912708 |
Target: 5'- gUCCGuGGACUUGGugGCCgCgucuuGGCCg -3' miRNA: 3'- aGGGCuUCUGGACCugUGG-Gac---UCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 197477 | 0.66 | 0.910998 |
Target: 5'- cUCCCGcucacaacgcgugcGAGACCUGcgcGAgGCCCgGcGCCa -3' miRNA: 3'- -AGGGC--------------UUCUGGAC---CUgUGGGaCuCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 135210 | 0.67 | 0.906931 |
Target: 5'- gUCUCG--GACCUGauccuaGGCGCCCUGcaguGCCa -3' miRNA: 3'- -AGGGCuuCUGGAC------CUGUGGGACu---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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