miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29929 3' -57.5 NC_006273.1 + 64820 1.12 0.00246
Target:  5'- cUCCCGAAGACCUGGACACCCUGAGCCu -3'
miRNA:   3'- -AGGGCUUCUGGACCUGUGGGACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 182735 0.78 0.35821
Target:  5'- gCCCGAGGugaACCccaUGGACGCCgaGGGCCu -3'
miRNA:   3'- aGGGCUUC---UGG---ACCUGUGGgaCUCGG- -5'
29929 3' -57.5 NC_006273.1 + 201073 0.76 0.448135
Target:  5'- -aCCGAGGagcuguaccugcGCCUGGacgGCACCCUGuGCCu -3'
miRNA:   3'- agGGCUUC------------UGGACC---UGUGGGACuCGG- -5'
29929 3' -57.5 NC_006273.1 + 82851 0.74 0.558817
Target:  5'- -gCCGAGcGCCUGGGCGCCgUGcgcauAGCCa -3'
miRNA:   3'- agGGCUUcUGGACCUGUGGgAC-----UCGG- -5'
29929 3' -57.5 NC_006273.1 + 115676 0.73 0.568454
Target:  5'- aUCCCGcuGACgCUGGuagACGCCCUGgAGCa -3'
miRNA:   3'- -AGGGCuuCUG-GACC---UGUGGGAC-UCGg -5'
29929 3' -57.5 NC_006273.1 + 97229 0.73 0.597588
Target:  5'- gCCCGcAGGCCgUGGcCGCCgccaUGAGCCg -3'
miRNA:   3'- aGGGCuUCUGG-ACCuGUGGg---ACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 40630 0.72 0.626931
Target:  5'- uUCaCCGGAGACggggGGGCACUCUuGGCCg -3'
miRNA:   3'- -AG-GGCUUCUGga--CCUGUGGGAcUCGG- -5'
29929 3' -57.5 NC_006273.1 + 70022 0.72 0.636728
Target:  5'- --aCGAGGcuuuCCUGGACACUCUG-GCCc -3'
miRNA:   3'- aggGCUUCu---GGACCUGUGGGACuCGG- -5'
29929 3' -57.5 NC_006273.1 + 111907 0.72 0.646521
Target:  5'- -gCCGAGGGCCUgcgccagcucaaGGGCGCCCUG-GUg -3'
miRNA:   3'- agGGCUUCUGGA------------CCUGUGGGACuCGg -5'
29929 3' -57.5 NC_006273.1 + 181760 0.72 0.665095
Target:  5'- gUCUGGAGACCUGGgccauguACACUgUGGGCa -3'
miRNA:   3'- aGGGCUUCUGGACC-------UGUGGgACUCGg -5'
29929 3' -57.5 NC_006273.1 + 173949 0.71 0.694221
Target:  5'- gCCCGAGGGCCUGGuagaguucgaggcGCAgCC-GGGCg -3'
miRNA:   3'- aGGGCUUCUGGACC-------------UGUgGGaCUCGg -5'
29929 3' -57.5 NC_006273.1 + 116420 0.71 0.695186
Target:  5'- --aCGAGGACUcGGACACCCa-AGCCg -3'
miRNA:   3'- aggGCUUCUGGaCCUGUGGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 64647 0.71 0.704805
Target:  5'- cCCCGuGGACCuguUGGGCGCucucaaCCUGuGCCu -3'
miRNA:   3'- aGGGCuUCUGG---ACCUGUG------GGACuCGG- -5'
29929 3' -57.5 NC_006273.1 + 39803 0.71 0.714368
Target:  5'- gUCUgGAAGGCCgUGGAaaacCACCCgGcAGCCg -3'
miRNA:   3'- -AGGgCUUCUGG-ACCU----GUGGGaC-UCGG- -5'
29929 3' -57.5 NC_006273.1 + 234695 0.71 0.714368
Target:  5'- gUCUgGAAGGCCgUGGAaaacCACCCgGcAGCCg -3'
miRNA:   3'- -AGGgCUUCUGG-ACCU----GUGGGaC-UCGG- -5'
29929 3' -57.5 NC_006273.1 + 188985 0.7 0.733292
Target:  5'- gCCCGAugGGGCUcGcGAU-CCCUGGGCCa -3'
miRNA:   3'- aGGGCU--UCUGGaC-CUGuGGGACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 195969 0.7 0.742638
Target:  5'- cCCCGcGGGCCgccGGGCGCCCcuccGAGUa -3'
miRNA:   3'- aGGGCuUCUGGa--CCUGUGGGa---CUCGg -5'
29929 3' -57.5 NC_006273.1 + 1076 0.7 0.742638
Target:  5'- cCCCGcGGGCCgccGGGCGCCCcuccGAGUa -3'
miRNA:   3'- aGGGCuUCUGGa--CCUGUGGGa---CUCGg -5'
29929 3' -57.5 NC_006273.1 + 59306 0.7 0.761056
Target:  5'- aCCCGGaucguGGGCCUGGAUcaguACCUggaGAGCg -3'
miRNA:   3'- aGGGCU-----UCUGGACCUG----UGGGa--CUCGg -5'
29929 3' -57.5 NC_006273.1 + 119513 0.7 0.761056
Target:  5'- cCCCGAAGACCUGG-CGCgCaacGGCa -3'
miRNA:   3'- aGGGCUUCUGGACCuGUGgGac-UCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.