miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29929 3' -57.5 NC_006273.1 + 148670 0.67 0.900938
Target:  5'- cUCUCGuggugcGGCCUGcccGACAUCgUGGGCCg -3'
miRNA:   3'- -AGGGCuu----CUGGAC---CUGUGGgACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 204177 0.67 0.899099
Target:  5'- aCCCGcAGcggcaaccagggcaGCCUGGACGCC---GGCCg -3'
miRNA:   3'- aGGGCuUC--------------UGGACCUGUGGgacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 21994 0.67 0.888316
Target:  5'- aUCCGAAGAUC-GGGCugCU--GGCCg -3'
miRNA:   3'- aGGGCUUCUGGaCCUGugGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 156326 0.67 0.888316
Target:  5'- gCCUGAcgccgcAGGCuCUGGugGCgCgUGGGCCc -3'
miRNA:   3'- aGGGCU------UCUG-GACCugUG-GgACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 134908 0.67 0.888316
Target:  5'- aCCU--GGACCUGGgcuGCAUCCUGGaCCa -3'
miRNA:   3'- aGGGcuUCUGGACC---UGUGGGACUcGG- -5'
29929 3' -57.5 NC_006273.1 + 200670 0.67 0.881693
Target:  5'- gCCCGAGGAUCUGG-CGgCCgccGGCg -3'
miRNA:   3'- aGGGCUUCUGGACCuGUgGGac-UCGg -5'
29929 3' -57.5 NC_006273.1 + 39557 0.68 0.874867
Target:  5'- cCCCGAAGGCCcuccGGC-CCCgcGGCCg -3'
miRNA:   3'- aGGGCUUCUGGac--CUGuGGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 206646 0.68 0.874867
Target:  5'- gUCUGAAcuguACCUGGGCGCCUcGGGCg -3'
miRNA:   3'- aGGGCUUc---UGGACCUGUGGGaCUCGg -5'
29929 3' -57.5 NC_006273.1 + 234450 0.68 0.874867
Target:  5'- cCCCGAAGGCCcuccGGC-CCCgcGGCCg -3'
miRNA:   3'- aGGGCUUCUGGac--CUGuGGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 121725 0.68 0.874867
Target:  5'- gUCCCG-AGACCgUGaGACGCgCCU--GCCa -3'
miRNA:   3'- -AGGGCuUCUGG-AC-CUGUG-GGAcuCGG- -5'
29929 3' -57.5 NC_006273.1 + 133381 0.68 0.874174
Target:  5'- aCCaGGAGGCgCUGGAgGCCUUGGauccuccGCCg -3'
miRNA:   3'- aGGgCUUCUG-GACCUgUGGGACU-------CGG- -5'
29929 3' -57.5 NC_006273.1 + 67872 0.68 0.867842
Target:  5'- aUCCCG-GGAUCUcGG--GCCCUGcGGCCa -3'
miRNA:   3'- -AGGGCuUCUGGA-CCugUGGGAC-UCGG- -5'
29929 3' -57.5 NC_006273.1 + 30040 0.68 0.867842
Target:  5'- gCCCGGcggccAGACCacGGGCAacaCCUG-GCCu -3'
miRNA:   3'- aGGGCU-----UCUGGa-CCUGUg--GGACuCGG- -5'
29929 3' -57.5 NC_006273.1 + 114628 0.68 0.860623
Target:  5'- -gCCGuguucACCUGGcCGCCCUGgcaGGCCg -3'
miRNA:   3'- agGGCuuc--UGGACCuGUGGGAC---UCGG- -5'
29929 3' -57.5 NC_006273.1 + 135170 0.68 0.840983
Target:  5'- aCCUGAcgguGGAgugcgucaacgacauCCUGGACGCCUgcAGCCa -3'
miRNA:   3'- aGGGCU----UCU---------------GGACCUGUGGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 70762 0.69 0.829913
Target:  5'- gCCCGAgcaGGugCgcgUGGugAUCgUGGGCCa -3'
miRNA:   3'- aGGGCU---UCugG---ACCugUGGgACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 110246 0.69 0.820989
Target:  5'- gCCCGugggacgGAGACUUGGGCGCC---GGCCu -3'
miRNA:   3'- aGGGC-------UUCUGGACCUGUGGgacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 205291 0.69 0.813544
Target:  5'- -gCCGAGuucGGCCUGGGCugUCUGgaAGCUu -3'
miRNA:   3'- agGGCUU---CUGGACCUGugGGAC--UCGG- -5'
29929 3' -57.5 NC_006273.1 + 31911 0.69 0.813544
Target:  5'- gUCCCGAcAGACCUauuaucGGugACCCggcGGCa -3'
miRNA:   3'- -AGGGCU-UCUGGA------CCugUGGGac-UCGg -5'
29929 3' -57.5 NC_006273.1 + 70922 0.69 0.813544
Target:  5'- cCUCGGGuuGCCUGGACG-CCUGGGCg -3'
miRNA:   3'- aGGGCUUc-UGGACCUGUgGGACUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.