miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29929 3' -57.5 NC_006273.1 + 1076 0.7 0.742638
Target:  5'- cCCCGcGGGCCgccGGGCGCCCcuccGAGUa -3'
miRNA:   3'- aGGGCuUCUGGa--CCUGUGGGa---CUCGg -5'
29929 3' -57.5 NC_006273.1 + 1638 0.66 0.938321
Target:  5'- -aCCGGcuGGGCgUGGGCACCCcGcGCg -3'
miRNA:   3'- agGGCU--UCUGgACCUGUGGGaCuCGg -5'
29929 3' -57.5 NC_006273.1 + 18513 0.7 0.779055
Target:  5'- cUCCauCGAGGGCCUGcGCGCCUgccGGCCu -3'
miRNA:   3'- -AGG--GCUUCUGGACcUGUGGGac-UCGG- -5'
29929 3' -57.5 NC_006273.1 + 21994 0.67 0.888316
Target:  5'- aUCCGAAGAUC-GGGCugCU--GGCCg -3'
miRNA:   3'- aGGGCUUCUGGaCCUGugGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 23306 0.7 0.770112
Target:  5'- cUCCGAacucagAGGCCaccgGGACGgCCUGGGCg -3'
miRNA:   3'- aGGGCU------UCUGGa---CCUGUgGGACUCGg -5'
29929 3' -57.5 NC_006273.1 + 24069 0.66 0.92361
Target:  5'- gCuuGGAuGACCUGGuuaucgucacGCGCCaccgGGGCCa -3'
miRNA:   3'- aGggCUU-CUGGACC----------UGUGGga--CUCGG- -5'
29929 3' -57.5 NC_006273.1 + 30040 0.68 0.867842
Target:  5'- gCCCGGcggccAGACCacGGGCAacaCCUG-GCCu -3'
miRNA:   3'- aGGGCU-----UCUGGa-CCUGUg--GGACuCGG- -5'
29929 3' -57.5 NC_006273.1 + 31481 0.69 0.80513
Target:  5'- cUCCuCGucGGCCUGGGCugCUguUGGGUa -3'
miRNA:   3'- -AGG-GCuuCUGGACCUGugGG--ACUCGg -5'
29929 3' -57.5 NC_006273.1 + 31794 0.66 0.933636
Target:  5'- cCCCGGAGugCcucgUGGAgACCaCcGaAGCCg -3'
miRNA:   3'- aGGGCUUCugG----ACCUgUGG-GaC-UCGG- -5'
29929 3' -57.5 NC_006273.1 + 31911 0.69 0.813544
Target:  5'- gUCCCGAcAGACCUauuaucGGugACCCggcGGCa -3'
miRNA:   3'- -AGGGCU-UCUGGA------CCugUGGGac-UCGg -5'
29929 3' -57.5 NC_006273.1 + 35726 0.7 0.770112
Target:  5'- gCCCGGAGACCcagaucucGGGCGCCgUGuuuGCg -3'
miRNA:   3'- aGGGCUUCUGGa-------CCUGUGGgACu--CGg -5'
29929 3' -57.5 NC_006273.1 + 39557 0.68 0.874867
Target:  5'- cCCCGAAGGCCcuccGGC-CCCgcGGCCg -3'
miRNA:   3'- aGGGCUUCUGGac--CUGuGGGacUCGG- -5'
29929 3' -57.5 NC_006273.1 + 39803 0.71 0.714368
Target:  5'- gUCUgGAAGGCCgUGGAaaacCACCCgGcAGCCg -3'
miRNA:   3'- -AGGgCUUCUGG-ACCU----GUGGGaC-UCGG- -5'
29929 3' -57.5 NC_006273.1 + 40630 0.72 0.626931
Target:  5'- uUCaCCGGAGACggggGGGCACUCUuGGCCg -3'
miRNA:   3'- -AG-GGCUUCUGga--CCUGUGGGAcUCGG- -5'
29929 3' -57.5 NC_006273.1 + 48077 0.66 0.917722
Target:  5'- cUCCGcGGACCUGGAgcagcCGCCCcGGcaacgacGCCg -3'
miRNA:   3'- aGGGCuUCUGGACCU-----GUGGGaCU-------CGG- -5'
29929 3' -57.5 NC_006273.1 + 50978 0.69 0.813544
Target:  5'- -gCCGAcauAGACaccgGGAUgucuCCCUGGGCCa -3'
miRNA:   3'- agGGCU---UCUGga--CCUGu---GGGACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 51685 0.69 0.796572
Target:  5'- cCCCGguGGCCUGGAUG---UGGGCCa -3'
miRNA:   3'- aGGGCuuCUGGACCUGUgggACUCGG- -5'
29929 3' -57.5 NC_006273.1 + 59306 0.7 0.761056
Target:  5'- aCCCGGaucguGGGCCUGGAUcaguACCUggaGAGCg -3'
miRNA:   3'- aGGGCU-----UCUGGACCUG----UGGGa--CUCGg -5'
29929 3' -57.5 NC_006273.1 + 64647 0.71 0.704805
Target:  5'- cCCCGuGGACCuguUGGGCGCucucaaCCUGuGCCu -3'
miRNA:   3'- aGGGCuUCUGG---ACCUGUG------GGACuCGG- -5'
29929 3' -57.5 NC_006273.1 + 64771 0.66 0.938321
Target:  5'- gCCgCGAAGGCCU--ACGCCgUGGGgCa -3'
miRNA:   3'- aGG-GCUUCUGGAccUGUGGgACUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.