Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29929 | 3' | -57.5 | NC_006273.1 | + | 198622 | 0.66 | 0.92361 |
Target: 5'- cCUCGgcGugCUcaGGcCACCCgccgGAGCCc -3' miRNA: 3'- aGGGCuuCugGA--CCuGUGGGa---CUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 121725 | 0.68 | 0.874867 |
Target: 5'- gUCCCG-AGACCgUGaGACGCgCCU--GCCa -3' miRNA: 3'- -AGGGCuUCUGG-AC-CUGUG-GGAcuCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 234450 | 0.68 | 0.874867 |
Target: 5'- cCCCGAAGGCCcuccGGC-CCCgcGGCCg -3' miRNA: 3'- aGGGCUUCUGGac--CUGuGGGacUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 21994 | 0.67 | 0.888316 |
Target: 5'- aUCCGAAGAUC-GGGCugCU--GGCCg -3' miRNA: 3'- aGGGCUUCUGGaCCUGugGGacUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 204177 | 0.67 | 0.899099 |
Target: 5'- aCCCGcAGcggcaaccagggcaGCCUGGACGCC---GGCCg -3' miRNA: 3'- aGGGCuUC--------------UGGACCUGUGGgacUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 148670 | 0.67 | 0.900938 |
Target: 5'- cUCUCGuggugcGGCCUGcccGACAUCgUGGGCCg -3' miRNA: 3'- -AGGGCuu----CUGGAC---CUGUGGgACUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 48077 | 0.66 | 0.917722 |
Target: 5'- cUCCGcGGACCUGGAgcagcCGCCCcGGcaacgacGCCg -3' miRNA: 3'- aGGGCuUCUGGACCU-----GUGGGaCU-------CGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 76594 | 0.66 | 0.918268 |
Target: 5'- gCCCGGAGGCgaCUcGGACuaucacGgCCUGAGCg -3' miRNA: 3'- aGGGCUUCUG--GA-CCUG------UgGGACUCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 120674 | 0.66 | 0.918268 |
Target: 5'- gUCCCaGAAGAacuCCUGGuACuucagauucugACCCUGAaccguaGCCa -3' miRNA: 3'- -AGGG-CUUCU---GGACC-UG-----------UGGGACU------CGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 133381 | 0.68 | 0.874174 |
Target: 5'- aCCaGGAGGCgCUGGAgGCCUUGGauccuccGCCg -3' miRNA: 3'- aGGgCUUCUG-GACCUgUGGGACU-------CGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 30040 | 0.68 | 0.867842 |
Target: 5'- gCCCGGcggccAGACCacGGGCAacaCCUG-GCCu -3' miRNA: 3'- aGGGCU-----UCUGGa-CCUGUg--GGACuCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 135170 | 0.68 | 0.840983 |
Target: 5'- aCCUGAcgguGGAgugcgucaacgacauCCUGGACGCCUgcAGCCa -3' miRNA: 3'- aGGGCU----UCU---------------GGACCUGUGGGacUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 111907 | 0.72 | 0.646521 |
Target: 5'- -gCCGAGGGCCUgcgccagcucaaGGGCGCCCUG-GUg -3' miRNA: 3'- agGGCUUCUGGA------------CCUGUGGGACuCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 234695 | 0.71 | 0.714368 |
Target: 5'- gUCUgGAAGGCCgUGGAaaacCACCCgGcAGCCg -3' miRNA: 3'- -AGGgCUUCUGG-ACCU----GUGGGaC-UCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 195969 | 0.7 | 0.742638 |
Target: 5'- cCCCGcGGGCCgccGGGCGCCCcuccGAGUa -3' miRNA: 3'- aGGGCuUCUGGa--CCUGUGGGa---CUCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 35726 | 0.7 | 0.770112 |
Target: 5'- gCCCGGAGACCcagaucucGGGCGCCgUGuuuGCg -3' miRNA: 3'- aGGGCUUCUGGa-------CCUGUGGgACu--CGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 94896 | 0.69 | 0.787001 |
Target: 5'- gUCCCGGaagguugGGGgCUGGGgGCCCggucagGAGCUu -3' miRNA: 3'- -AGGGCU-------UCUgGACCUgUGGGa-----CUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 51685 | 0.69 | 0.796572 |
Target: 5'- cCCCGguGGCCUGGAUG---UGGGCCa -3' miRNA: 3'- aGGGCuuCUGGACCUGUgggACUCGG- -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 31911 | 0.69 | 0.813544 |
Target: 5'- gUCCCGAcAGACCUauuaucGGugACCCggcGGCa -3' miRNA: 3'- -AGGGCU-UCUGGA------CCugUGGGac-UCGg -5' |
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29929 | 3' | -57.5 | NC_006273.1 | + | 110246 | 0.69 | 0.820989 |
Target: 5'- gCCCGugggacgGAGACUUGGGCGCC---GGCCu -3' miRNA: 3'- aGGGC-------UUCUGGACCUGUGGgacUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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