miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2993 3' -48.6 NC_001493.1 + 4005 0.66 0.998928
Target:  5'- -gGUGUGGUgcagGUGGAGAGcacggugaccgGCAUCCCg -3'
miRNA:   3'- caCACGCCG----CACUUUUUa----------UGUAGGGg -5'
2993 3' -48.6 NC_001493.1 + 119560 0.66 0.998928
Target:  5'- -gGUGUGGUgcagGUGGAGAGcacggugaccgGCAUCCCg -3'
miRNA:   3'- caCACGCCG----CACUUUUUa----------UGUAGGGg -5'
2993 3' -48.6 NC_001493.1 + 105923 0.66 0.998928
Target:  5'- ---cGCGGUGUGAu-----CAUCgCCCa -3'
miRNA:   3'- cacaCGCCGCACUuuuuauGUAG-GGG- -5'
2993 3' -48.6 NC_001493.1 + 60315 0.66 0.998928
Target:  5'- ---cGCGGagguGUGAccgucGAGAUAuCGUCCCCc -3'
miRNA:   3'- cacaCGCCg---CACU-----UUUUAU-GUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 123982 0.66 0.998928
Target:  5'- --cUGCGGCuGUGGAcccggGCAcCCCCc -3'
miRNA:   3'- cacACGCCG-CACUUuuua-UGUaGGGG- -5'
2993 3' -48.6 NC_001493.1 + 8428 0.66 0.998928
Target:  5'- --cUGCGGCuGUGGAcccggGCAcCCCCc -3'
miRNA:   3'- cacACGCCG-CACUUuuua-UGUaGGGG- -5'
2993 3' -48.6 NC_001493.1 + 33248 0.66 0.998791
Target:  5'- -cGUGCGucgaGUGAAAAAgcucgaaccggacCGUCCCCg -3'
miRNA:   3'- caCACGCcg--CACUUUUUau-----------GUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 107522 0.66 0.998692
Target:  5'- -aGU-UGGUGUGAAAGA-GC-UCCCCa -3'
miRNA:   3'- caCAcGCCGCACUUUUUaUGuAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 49728 0.66 0.998413
Target:  5'- ---cGCGGCGaGGAAAucggguGUCCCCg -3'
miRNA:   3'- cacaCGCCGCaCUUUUuaug--UAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 32708 0.66 0.998413
Target:  5'- aUGUacGCGGCGUauGGGAAGUgccagaaaaACAUCCUg -3'
miRNA:   3'- cACA--CGCCGCA--CUUUUUA---------UGUAGGGg -5'
2993 3' -48.6 NC_001493.1 + 110441 0.66 0.997703
Target:  5'- ---cGCGGCGaUGGcgAAGAUugAgCCCCu -3'
miRNA:   3'- cacaCGCCGC-ACU--UUUUAugUaGGGG- -5'
2993 3' -48.6 NC_001493.1 + 7725 0.67 0.997258
Target:  5'- -gGUGCGucuauccgaGCGgucccGAAAGUGCAUCCCg -3'
miRNA:   3'- caCACGC---------CGCac---UUUUUAUGUAGGGg -5'
2993 3' -48.6 NC_001493.1 + 41525 0.67 0.996744
Target:  5'- uUGUaGCGGCGgcccugGAGGAAgcCGUCCUUu -3'
miRNA:   3'- cACA-CGCCGCa-----CUUUUUauGUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 92884 0.67 0.995478
Target:  5'- --cUGCGGUGgguucgGAuauGGUGCGUCCaCCg -3'
miRNA:   3'- cacACGCCGCa-----CUuu-UUAUGUAGG-GG- -5'
2993 3' -48.6 NC_001493.1 + 133937 0.67 0.994708
Target:  5'- gGUG-GCGuGCGUGAAuGAggccACGUUCCUg -3'
miRNA:   3'- -CACaCGC-CGCACUUuUUa---UGUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 18383 0.67 0.994708
Target:  5'- gGUG-GCGuGCGUGAAuGAggccACGUUCCUg -3'
miRNA:   3'- -CACaCGC-CGCACUUuUUa---UGUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 55306 0.68 0.993648
Target:  5'- uUGcUGCGGcCG-GAAGGAggcugcucaacgACAUCCCCc -3'
miRNA:   3'- cAC-ACGCC-GCaCUUUUUa-----------UGUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 132610 0.68 0.992851
Target:  5'- -cGUGCGuGCGUGuguguGUAUGUUCCUc -3'
miRNA:   3'- caCACGC-CGCACuuuu-UAUGUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 17056 0.68 0.992851
Target:  5'- -cGUGCGuGCGUGuguguGUAUGUUCCUc -3'
miRNA:   3'- caCACGC-CGCACuuuu-UAUGUAGGGG- -5'
2993 3' -48.6 NC_001493.1 + 134207 0.68 0.989129
Target:  5'- uUGUGaaauauuuuacaUGGCG-GAGAAGUugAUCCCg -3'
miRNA:   3'- cACAC------------GCCGCaCUUUUUAugUAGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.