miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2993 5' -54.9 NC_001493.1 + 40203 0.66 0.953408
Target:  5'- cCCGcucGGGUUCCgaguuccaaGCGCGUAacgugaGCGCa -3'
miRNA:   3'- -GGCu--CCCAAGGagc------UGCGCAUg-----UGCG- -5'
2993 5' -54.9 NC_001493.1 + 47866 0.66 0.94935
Target:  5'- uCCGAGGGUaCCggaaaacacgCGugGacccaGUGCAUGa -3'
miRNA:   3'- -GGCUCCCAaGGa---------GCugCg----CAUGUGCg -5'
2993 5' -54.9 NC_001493.1 + 95449 0.66 0.940548
Target:  5'- cCCGAGGGUUCaCUgccCGUGUACAg-- -3'
miRNA:   3'- -GGCUCCCAAG-GAgcuGCGCAUGUgcg -5'
2993 5' -54.9 NC_001493.1 + 84880 0.66 0.935799
Target:  5'- aCGAGGGggUCCUCGGgaUGUuucgauucaaucGCAUGCu -3'
miRNA:   3'- gGCUCCCa-AGGAGCUgcGCA------------UGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 94695 0.67 0.930815
Target:  5'- aCCGGGGGUacgUCC-CGGUGgGUGcCACGg -3'
miRNA:   3'- -GGCUCCCA---AGGaGCUGCgCAU-GUGCg -5'
2993 5' -54.9 NC_001493.1 + 110905 0.67 0.930815
Target:  5'- -gGAGGGggaaggugggUgCUCGaAUGCGUGC-CGCa -3'
miRNA:   3'- ggCUCCCa---------AgGAGC-UGCGCAUGuGCG- -5'
2993 5' -54.9 NC_001493.1 + 110579 0.67 0.925595
Target:  5'- gCGAGGGUaCCgaCGAgGUcccGCACGCg -3'
miRNA:   3'- gGCUCCCAaGGa-GCUgCGca-UGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 46615 0.67 0.925595
Target:  5'- --cAGGGUcuUCCUCGACGgGaACaaggACGCu -3'
miRNA:   3'- ggcUCCCA--AGGAGCUGCgCaUG----UGCG- -5'
2993 5' -54.9 NC_001493.1 + 87766 0.67 0.925595
Target:  5'- uCCGGGGGUagauccggcUCCUCGuACGCcccgGgGgGCa -3'
miRNA:   3'- -GGCUCCCA---------AGGAGC-UGCGca--UgUgCG- -5'
2993 5' -54.9 NC_001493.1 + 48433 0.67 0.922351
Target:  5'- -gGAGGGUcucgaacacauUCCcgcgaUCGAcagcgcgaggaucauCGCGUACGCGUg -3'
miRNA:   3'- ggCUCCCA-----------AGG-----AGCU---------------GCGCAUGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 53050 0.67 0.92014
Target:  5'- uCCGAGGGUggCUUGAgCGagaGUG-ACGCg -3'
miRNA:   3'- -GGCUCCCAagGAGCU-GCg--CAUgUGCG- -5'
2993 5' -54.9 NC_001493.1 + 129821 0.67 0.919021
Target:  5'- uCCGGGGGUugaUCCUCGAucaccuguccaggaaUucuucgggacuggugGCGgcagACGCGCu -3'
miRNA:   3'- -GGCUCCCA---AGGAGCU---------------G---------------CGCa---UGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 14267 0.67 0.919021
Target:  5'- uCCGGGGGUugaUCCUCGAucaccuguccaggaaUucuucgggacuggugGCGgcagACGCGCu -3'
miRNA:   3'- -GGCUCCCA---AGGAGCU---------------G---------------CGCa---UGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 64094 0.67 0.91445
Target:  5'- uCCGAGGGauaucaUCUUCGAgaugGuCGUAUGCGCc -3'
miRNA:   3'- -GGCUCCCa-----AGGAGCUg---C-GCAUGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 23328 0.67 0.91445
Target:  5'- -aGAGGGggCUaC-ACGCGuUACACGCc -3'
miRNA:   3'- ggCUCCCaaGGaGcUGCGC-AUGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 13254 0.67 0.908527
Target:  5'- -aGAGGGUga-UCuuCGCGUGCGgGCa -3'
miRNA:   3'- ggCUCCCAaggAGcuGCGCAUGUgCG- -5'
2993 5' -54.9 NC_001493.1 + 128808 0.67 0.908527
Target:  5'- -aGAGGGUga-UCuuCGCGUGCGgGCa -3'
miRNA:   3'- ggCUCCCAaggAGcuGCGCAUGUgCG- -5'
2993 5' -54.9 NC_001493.1 + 42170 0.67 0.908527
Target:  5'- cUCG-GGGaUCggaCGGCGCGUgGCGCGCa -3'
miRNA:   3'- -GGCuCCCaAGga-GCUGCGCA-UGUGCG- -5'
2993 5' -54.9 NC_001493.1 + 5847 0.67 0.902371
Target:  5'- cCCGGGGGagcugccacUCUCGAUGCGgaGCugGUc -3'
miRNA:   3'- -GGCUCCCaa-------GGAGCUGCGCa-UGugCG- -5'
2993 5' -54.9 NC_001493.1 + 121401 0.67 0.902371
Target:  5'- cCCGGGGGagcugccacUCUCGAUGCGgaGCugGUc -3'
miRNA:   3'- -GGCUCCCaa-------GGAGCUGCGCa-UGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.