Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29930 | 3' | -48.9 | NC_006273.1 | + | 26811 | 0.7 | 0.993043 |
Target: 5'- gGGUGggGAcgGGGGacgcgguagGGAgcaaaacCGGGUACa -3' miRNA: 3'- -UCACuuCUuaCUCCa--------CCUa------GUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 57177 | 0.66 | 0.999613 |
Target: 5'- --cGGAcAAUGAGGaGGAccccaUCAGGUACu -3' miRNA: 3'- ucaCUUcUUACUCCaCCU-----AGUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 63059 | 0.66 | 0.999692 |
Target: 5'- aAGUGAacAGAgugAUGAGGaacaGGAggaGGGUGCu -3' miRNA: 3'- -UCACU--UCU---UACUCCa---CCUag-UCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 64406 | 1.12 | 0.013873 |
Target: 5'- aAGUGAAGAAUGAGGUGGAUCAGGUACg -3' miRNA: 3'- -UCACUUCUUACUCCACCUAGUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 100812 | 0.71 | 0.980752 |
Target: 5'- cGGUGggGAccuUGAGGUcggcgGGGUaGGGUGCc -3' miRNA: 3'- -UCACuuCUu--ACUCCA-----CCUAgUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 109525 | 0.69 | 0.996764 |
Target: 5'- uGGUGGAGAca-GGGUaGGAgauaccuuugaUCAGGUACu -3' miRNA: 3'- -UCACUUCUuacUCCA-CCU-----------AGUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 115551 | 0.67 | 0.999401 |
Target: 5'- --aGGAGGAUGGGGgggaccgGGGUgGuGGUGCu -3' miRNA: 3'- ucaCUUCUUACUCCa------CCUAgU-CCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 120350 | 0.66 | 0.999613 |
Target: 5'- --cGAaggcGGGAUGGGGggaGGGUCAGGggaUGCg -3' miRNA: 3'- ucaCU----UCUUACUCCa--CCUAGUCC---AUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 126635 | 0.68 | 0.997692 |
Target: 5'- uGGUGggGuuUGAguagaaacGGUGGAa-AGGUACg -3' miRNA: 3'- -UCACuuCuuACU--------CCACCUagUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 130572 | 0.71 | 0.97848 |
Target: 5'- aAGUGggGGAggggGAaacGGUGGAaaUCAGGgACa -3' miRNA: 3'- -UCACuuCUUa---CU---CCACCU--AGUCCaUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 141698 | 0.68 | 0.99726 |
Target: 5'- aAGggGggGggUGAGGggggGGGUUAcGGUGg -3' miRNA: 3'- -UCa-CuuCuuACUCCa---CCUAGU-CCAUg -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 156470 | 0.71 | 0.986498 |
Target: 5'- aAGUGGAGGGcgccucgggucUGAGcaugaagggcGUGGAUCuGGUGCg -3' miRNA: 3'- -UCACUUCUU-----------ACUC----------CACCUAGuCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 160499 | 0.67 | 0.999401 |
Target: 5'- cGUGcAGGAUGAcGUGGAUUcuccGGUGCc -3' miRNA: 3'- uCACuUCUUACUcCACCUAGu---CCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 167707 | 0.72 | 0.967388 |
Target: 5'- --cGAGGGAggagGAGGUGGuggUGGGUACg -3' miRNA: 3'- ucaCUUCUUa---CUCCACCua-GUCCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 188424 | 0.7 | 0.993043 |
Target: 5'- uGGUGAAGGgcgGUG-GGUGGAacagCAGGUu- -3' miRNA: 3'- -UCACUUCU---UACuCCACCUa---GUCCAug -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 195886 | 0.69 | 0.996764 |
Target: 5'- cGGUGAcAGAagGAGGUGGc-CAcGGUGCc -3' miRNA: 3'- -UCACU-UCUuaCUCCACCuaGU-CCAUG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 198011 | 0.76 | 0.870457 |
Target: 5'- uGUGGAGGAcGGGGUGGAgCGGGUcGCc -3' miRNA: 3'- uCACUUCUUaCUCCACCUaGUCCA-UG- -5' |
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29930 | 3' | -48.9 | NC_006273.1 | + | 211369 | 0.67 | 0.999261 |
Target: 5'- uGGUGAaaAGGAUGAGaauGAgCAGGUACa -3' miRNA: 3'- -UCACU--UCUUACUCcacCUaGUCCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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