miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29930 5' -59.6 NC_006273.1 + 185443 0.66 0.837335
Target:  5'- -cGUGGCCUGGCCCgaacgcugcuUCaUCCAgCUCCg- -3'
miRNA:   3'- caCGUUGGACCGGG----------AG-AGGU-GAGGga -5'
29930 5' -59.6 NC_006273.1 + 21714 0.66 0.837335
Target:  5'- nUGCGACCUGGCUUUCggaUCgCGCUCa-- -3'
miRNA:   3'- cACGUUGGACCGGGAG---AG-GUGAGgga -5'
29930 5' -59.6 NC_006273.1 + 70752 0.66 0.82935
Target:  5'- gGUGUugGACgaGGCCUUCcCCACcuUCCCg -3'
miRNA:   3'- -CACG--UUGgaCCGGGAGaGGUG--AGGGa -5'
29930 5' -59.6 NC_006273.1 + 122115 0.66 0.812049
Target:  5'- -cGCGcACCUGGCCCgacagacgCUCUugcaccaGCUCCUc -3'
miRNA:   3'- caCGU-UGGACCGGGa-------GAGG-------UGAGGGa -5'
29930 5' -59.6 NC_006273.1 + 45407 0.67 0.7509
Target:  5'- cUGCcGCCUGcaGCCCagUCUCCGCgagccgCCCa -3'
miRNA:   3'- cACGuUGGAC--CGGG--AGAGGUGa-----GGGa -5'
29930 5' -59.6 NC_006273.1 + 141258 0.68 0.741593
Target:  5'- -cGCGACCcauGCCCggcacggggCUCgCGCUCCCUa -3'
miRNA:   3'- caCGUUGGac-CGGGa--------GAG-GUGAGGGA- -5'
29930 5' -59.6 NC_006273.1 + 52259 0.68 0.741593
Target:  5'- -cGCAGCCUGGCuCCgcgCUUCAUcaguUUCCUc -3'
miRNA:   3'- caCGUUGGACCG-GGa--GAGGUG----AGGGA- -5'
29930 5' -59.6 NC_006273.1 + 95158 0.68 0.741593
Target:  5'- -cGCGGCuugCUGGCCCUgggcguggucCcCCACUCCCc -3'
miRNA:   3'- caCGUUG---GACCGGGA----------GaGGUGAGGGa -5'
29930 5' -59.6 NC_006273.1 + 111746 0.68 0.713177
Target:  5'- cGUGC-GCCcGGCCUUCUCUcucuUUCCCg -3'
miRNA:   3'- -CACGuUGGaCCGGGAGAGGu---GAGGGa -5'
29930 5' -59.6 NC_006273.1 + 147385 0.68 0.713177
Target:  5'- gGUGCAcgACCUgucGGCgCUCUUCGCgCCCa -3'
miRNA:   3'- -CACGU--UGGA---CCGgGAGAGGUGaGGGa -5'
29930 5' -59.6 NC_006273.1 + 70820 0.69 0.648943
Target:  5'- -aGCGGCCUGGCCUUCggcacgcuggcgggCCGaccgccgcgccCUCCCUc -3'
miRNA:   3'- caCGUUGGACCGGGAGa-------------GGU-----------GAGGGA- -5'
29930 5' -59.6 NC_006273.1 + 198843 0.69 0.64501
Target:  5'- -aGCAGCCaGGUcaCCUcCUCCGCUCCg- -3'
miRNA:   3'- caCGUUGGaCCG--GGA-GAGGUGAGGga -5'
29930 5' -59.6 NC_006273.1 + 192679 0.7 0.625337
Target:  5'- -cGCGGCCUGGCCggCUgUCUGCgCCCa -3'
miRNA:   3'- caCGUUGGACCGG--GAgAGGUGaGGGa -5'
29930 5' -59.6 NC_006273.1 + 28047 0.7 0.615503
Target:  5'- -cGCGACCUu-CCCUCUCCACccagCCCc -3'
miRNA:   3'- caCGUUGGAccGGGAGAGGUGa---GGGa -5'
29930 5' -59.6 NC_006273.1 + 96016 0.71 0.566639
Target:  5'- cGUGCAACgaGGCCUUCcugCCGCUCauggCCUu -3'
miRNA:   3'- -CACGUUGgaCCGGGAGa--GGUGAG----GGA- -5'
29930 5' -59.6 NC_006273.1 + 21684 0.73 0.411807
Target:  5'- cGUGCAcgACCUGcGCCaCUCggaCCGCUCCUg -3'
miRNA:   3'- -CACGU--UGGAC-CGG-GAGa--GGUGAGGGa -5'
29930 5' -59.6 NC_006273.1 + 64451 1.06 0.00288
Target:  5'- uGUGCAACCUGGCCCUCUCCACUCCCUu -3'
miRNA:   3'- -CACGUUGGACCGGGAGAGGUGAGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.