Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29930 | 5' | -59.6 | NC_006273.1 | + | 64451 | 1.06 | 0.00288 |
Target: 5'- uGUGCAACCUGGCCCUCUCCACUCCCUu -3' miRNA: 3'- -CACGUUGGACCGGGAGAGGUGAGGGA- -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 21684 | 0.73 | 0.411807 |
Target: 5'- cGUGCAcgACCUGcGCCaCUCggaCCGCUCCUg -3' miRNA: 3'- -CACGU--UGGAC-CGG-GAGa--GGUGAGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 96016 | 0.71 | 0.566639 |
Target: 5'- cGUGCAACgaGGCCUUCcugCCGCUCauggCCUu -3' miRNA: 3'- -CACGUUGgaCCGGGAGa--GGUGAG----GGA- -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 28047 | 0.7 | 0.615503 |
Target: 5'- -cGCGACCUu-CCCUCUCCACccagCCCc -3' miRNA: 3'- caCGUUGGAccGGGAGAGGUGa---GGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 192679 | 0.7 | 0.625337 |
Target: 5'- -cGCGGCCUGGCCggCUgUCUGCgCCCa -3' miRNA: 3'- caCGUUGGACCGG--GAgAGGUGaGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 198843 | 0.69 | 0.64501 |
Target: 5'- -aGCAGCCaGGUcaCCUcCUCCGCUCCg- -3' miRNA: 3'- caCGUUGGaCCG--GGA-GAGGUGAGGga -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 70820 | 0.69 | 0.648943 |
Target: 5'- -aGCGGCCUGGCCUUCggcacgcuggcgggCCGaccgccgcgccCUCCCUc -3' miRNA: 3'- caCGUUGGACCGGGAGa-------------GGU-----------GAGGGA- -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 111746 | 0.68 | 0.713177 |
Target: 5'- cGUGC-GCCcGGCCUUCUCUcucuUUCCCg -3' miRNA: 3'- -CACGuUGGaCCGGGAGAGGu---GAGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 147385 | 0.68 | 0.713177 |
Target: 5'- gGUGCAcgACCUgucGGCgCUCUUCGCgCCCa -3' miRNA: 3'- -CACGU--UGGA---CCGgGAGAGGUGaGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 141258 | 0.68 | 0.741593 |
Target: 5'- -cGCGACCcauGCCCggcacggggCUCgCGCUCCCUa -3' miRNA: 3'- caCGUUGGac-CGGGa--------GAG-GUGAGGGA- -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 52259 | 0.68 | 0.741593 |
Target: 5'- -cGCAGCCUGGCuCCgcgCUUCAUcaguUUCCUc -3' miRNA: 3'- caCGUUGGACCG-GGa--GAGGUG----AGGGA- -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 95158 | 0.68 | 0.741593 |
Target: 5'- -cGCGGCuugCUGGCCCUgggcguggucCcCCACUCCCc -3' miRNA: 3'- caCGUUG---GACCGGGA----------GaGGUGAGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 45407 | 0.67 | 0.7509 |
Target: 5'- cUGCcGCCUGcaGCCCagUCUCCGCgagccgCCCa -3' miRNA: 3'- cACGuUGGAC--CGGG--AGAGGUGa-----GGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 122115 | 0.66 | 0.812049 |
Target: 5'- -cGCGcACCUGGCCCgacagacgCUCUugcaccaGCUCCUc -3' miRNA: 3'- caCGU-UGGACCGGGa-------GAGG-------UGAGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 70752 | 0.66 | 0.82935 |
Target: 5'- gGUGUugGACgaGGCCUUCcCCACcuUCCCg -3' miRNA: 3'- -CACG--UUGgaCCGGGAGaGGUG--AGGGa -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 21714 | 0.66 | 0.837335 |
Target: 5'- nUGCGACCUGGCUUUCggaUCgCGCUCa-- -3' miRNA: 3'- cACGUUGGACCGGGAG---AG-GUGAGgga -5' |
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29930 | 5' | -59.6 | NC_006273.1 | + | 185443 | 0.66 | 0.837335 |
Target: 5'- -cGUGGCCUGGCCCgaacgcugcuUCaUCCAgCUCCg- -3' miRNA: 3'- caCGUUGGACCGGG----------AG-AGGU-GAGGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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