miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 3' -60 NC_006273.1 + 75533 0.66 0.854066
Target:  5'- gGCCGGCCUCGaaacCUcGGCGGCCgACUu -3'
miRNA:   3'- gUGGCCGGGGUgc--GA-CUGUUGGgUGA- -5'
29931 3' -60 NC_006273.1 + 118883 0.66 0.854066
Target:  5'- -cCUGGCCCUGCGCguGCAACCaguGCUc -3'
miRNA:   3'- guGGCCGGGGUGCGacUGUUGGg--UGA- -5'
29931 3' -60 NC_006273.1 + 32844 0.66 0.854066
Target:  5'- aCGCCGGCC--ACGCUG-CGGuCCCAaCUg -3'
miRNA:   3'- -GUGGCCGGggUGCGACuGUU-GGGU-GA- -5'
29931 3' -60 NC_006273.1 + 36652 0.66 0.854066
Target:  5'- aACUGGCCUgGCgGCggguagccGACGACUCACa -3'
miRNA:   3'- gUGGCCGGGgUG-CGa-------CUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 16576 0.66 0.846559
Target:  5'- uGCUGGCCCUucgagguaGCGCcaGCcGCCCGCUu -3'
miRNA:   3'- gUGGCCGGGG--------UGCGacUGuUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 94390 0.66 0.846559
Target:  5'- gGCCGGgCaCCGgGC--GCGGCCCGCUc -3'
miRNA:   3'- gUGGCCgG-GGUgCGacUGUUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 58222 0.66 0.846559
Target:  5'- aACaCGGUgCCGCGCga--AGCCCACa -3'
miRNA:   3'- gUG-GCCGgGGUGCGacugUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 66779 0.66 0.846559
Target:  5'- aGCCgcGGCUCgGCGCUGACAcugGCCUugguACa -3'
miRNA:   3'- gUGG--CCGGGgUGCGACUGU---UGGG----UGa -5'
29931 3' -60 NC_006273.1 + 15731 0.66 0.846559
Target:  5'- aAUCGGCUuggCgACGCUGGCGAagCCACg -3'
miRNA:   3'- gUGGCCGG---GgUGCGACUGUUg-GGUGa -5'
29931 3' -60 NC_006273.1 + 185062 0.66 0.846559
Target:  5'- aCACCGGCgCCgGCGacgUGGucucauaguucuCGGCCCACa -3'
miRNA:   3'- -GUGGCCG-GGgUGCg--ACU------------GUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 153089 0.66 0.845798
Target:  5'- --aCGGCCucgucauCCACGCc-GCGGCCCACg -3'
miRNA:   3'- gugGCCGG-------GGUGCGacUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 200692 0.66 0.844272
Target:  5'- aCACCGGCUUCAuggcuccgaaggucCGCUGcuCGGCuCCGCUc -3'
miRNA:   3'- -GUGGCCGGGGU--------------GCGACu-GUUG-GGUGA- -5'
29931 3' -60 NC_006273.1 + 174120 0.66 0.844272
Target:  5'- gGCCGcGCgCgCCGCGCUG-CAguggcuggaccuggGCCCGCa -3'
miRNA:   3'- gUGGC-CG-G-GGUGCGACuGU--------------UGGGUGa -5'
29931 3' -60 NC_006273.1 + 81307 0.66 0.838876
Target:  5'- gCACUaGUucgCCCACGCUGGCAaugACCuCACg -3'
miRNA:   3'- -GUGGcCG---GGGUGCGACUGU---UGG-GUGa -5'
29931 3' -60 NC_006273.1 + 204416 0.66 0.838876
Target:  5'- gCugCGGCgcgaCCACGCUGGgcucgaAGCCCAg- -3'
miRNA:   3'- -GugGCCGg---GGUGCGACUg-----UUGGGUga -5'
29931 3' -60 NC_006273.1 + 231739 0.66 0.838876
Target:  5'- gCAgUGGCCCCAC-CUcGGCAugCCGg- -3'
miRNA:   3'- -GUgGCCGGGGUGcGA-CUGUugGGUga -5'
29931 3' -60 NC_006273.1 + 14359 0.66 0.838876
Target:  5'- cCGCCGGagcuCCCCGCGCUGccugugGCGGcugaggauCCCAUg -3'
miRNA:   3'- -GUGGCC----GGGGUGCGAC------UGUU--------GGGUGa -5'
29931 3' -60 NC_006273.1 + 167086 0.66 0.838876
Target:  5'- gAUCGGCCUCGuCGCUGAgcgcuuucCGGgCCGCg -3'
miRNA:   3'- gUGGCCGGGGU-GCGACU--------GUUgGGUGa -5'
29931 3' -60 NC_006273.1 + 20634 0.66 0.838876
Target:  5'- cCGCCGGCaCCCACGgUGcuccgGCAGaacgaggaaCCACg -3'
miRNA:   3'- -GUGGCCG-GGGUGCgAC-----UGUUg--------GGUGa -5'
29931 3' -60 NC_006273.1 + 95098 0.66 0.838876
Target:  5'- gGCCGGUCCCgugACGCUccccuccCCCACUg -3'
miRNA:   3'- gUGGCCGGGG---UGCGAcuguu--GGGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.