Results 1 - 20 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29931 | 3' | -60 | NC_006273.1 | + | 102086 | 0.66 | 0.823009 |
Target: 5'- gCGgCGGCCaCACGCgggugacGACGAgCCGCUg -3' miRNA: 3'- -GUgGCCGGgGUGCGa------CUGUUgGGUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 32844 | 0.66 | 0.854066 |
Target: 5'- aCGCCGGCC--ACGCUG-CGGuCCCAaCUg -3' miRNA: 3'- -GUGGCCGGggUGCGACuGUU-GGGU-GA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 15731 | 0.66 | 0.846559 |
Target: 5'- aAUCGGCUuggCgACGCUGGCGAagCCACg -3' miRNA: 3'- gUGGCCGG---GgUGCGACUGUUg-GGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 45029 | 0.66 | 0.838876 |
Target: 5'- --gCGGcCCCCACgGC-GGCGGCCUGCUc -3' miRNA: 3'- gugGCC-GGGGUG-CGaCUGUUGGGUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 135616 | 0.66 | 0.814837 |
Target: 5'- aCGCCGGCCgUUACGCcGACGugAUCCAa- -3' miRNA: 3'- -GUGGCCGG-GGUGCGaCUGU--UGGGUga -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 196530 | 0.66 | 0.823009 |
Target: 5'- aACCGGCUggGCGUgGGCAcCCCGCg -3' miRNA: 3'- gUGGCCGGggUGCGaCUGUuGGGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 90348 | 0.66 | 0.831024 |
Target: 5'- gACUGGCCguaCCgccgGCGCUGGgAugCCGCg -3' miRNA: 3'- gUGGCCGG---GG----UGCGACUgUugGGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 21217 | 0.66 | 0.831024 |
Target: 5'- gGCCGGCUgCCGcCGCUGugGcugCCGCUg -3' miRNA: 3'- gUGGCCGG-GGU-GCGACugUug-GGUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 81307 | 0.66 | 0.838876 |
Target: 5'- gCACUaGUucgCCCACGCUGGCAaugACCuCACg -3' miRNA: 3'- -GUGGcCG---GGGUGCGACUGU---UGG-GUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 118883 | 0.66 | 0.854066 |
Target: 5'- -cCUGGCCCUGCGCguGCAACCaguGCUc -3' miRNA: 3'- guGGCCGGGGUGCGacUGUUGGg--UGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 75533 | 0.66 | 0.854066 |
Target: 5'- gGCCGGCCUCGaaacCUcGGCGGCCgACUu -3' miRNA: 3'- gUGGCCGGGGUgc--GA-CUGUUGGgUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 85665 | 0.66 | 0.814837 |
Target: 5'- aGCCGGCCCag----GACAugACCCACg -3' miRNA: 3'- gUGGCCGGGgugcgaCUGU--UGGGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 20634 | 0.66 | 0.838876 |
Target: 5'- cCGCCGGCaCCCACGgUGcuccgGCAGaacgaggaaCCACg -3' miRNA: 3'- -GUGGCCG-GGGUGCgAC-----UGUUg--------GGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 153089 | 0.66 | 0.845798 |
Target: 5'- --aCGGCCucgucauCCACGCc-GCGGCCCACg -3' miRNA: 3'- gugGCCGG-------GGUGCGacUGUUGGGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 200692 | 0.66 | 0.844272 |
Target: 5'- aCACCGGCUUCAuggcuccgaaggucCGCUGcuCGGCuCCGCUc -3' miRNA: 3'- -GUGGCCGGGGU--------------GCGACu-GUUG-GGUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 185062 | 0.66 | 0.846559 |
Target: 5'- aCACCGGCgCCgGCGacgUGGucucauaguucuCGGCCCACa -3' miRNA: 3'- -GUGGCCG-GGgUGCg--ACU------------GUUGGGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 95098 | 0.66 | 0.838876 |
Target: 5'- gGCCGGUCCCgugACGCUccccuccCCCACUg -3' miRNA: 3'- gUGGCCGGGG---UGCGAcuguu--GGGUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 58222 | 0.66 | 0.846559 |
Target: 5'- aACaCGGUgCCGCGCga--AGCCCACa -3' miRNA: 3'- gUG-GCCGgGGUGCGacugUUGGGUGa -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 94390 | 0.66 | 0.846559 |
Target: 5'- gGCCGGgCaCCGgGC--GCGGCCCGCUc -3' miRNA: 3'- gUGGCCgG-GGUgCGacUGUUGGGUGA- -5' |
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29931 | 3' | -60 | NC_006273.1 | + | 66779 | 0.66 | 0.846559 |
Target: 5'- aGCCgcGGCUCgGCGCUGACAcugGCCUugguACa -3' miRNA: 3'- gUGG--CCGGGgUGCGACUGU---UGGG----UGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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