miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 3' -60 NC_006273.1 + 63456 1.06 0.003055
Target:  5'- gCACCGGCCCCACGCUGACAACCCACUc -3'
miRNA:   3'- -GUGGCCGGGGUGCGACUGUUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 19614 0.82 0.126317
Target:  5'- gACCGGCCCUagaaagaccaagagcAUGCUGugGGCCCACUg -3'
miRNA:   3'- gUGGCCGGGG---------------UGCGACugUUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 233430 0.77 0.249795
Target:  5'- uCGCCGGCCCCGcCGC--GCAACCCAg- -3'
miRNA:   3'- -GUGGCCGGGGU-GCGacUGUUGGGUga -5'
29931 3' -60 NC_006273.1 + 38537 0.77 0.249795
Target:  5'- uCGCCGGCCCCGcCGC--GCAACCCAg- -3'
miRNA:   3'- -GUGGCCGGGGU-GCGacUGUUGGGUga -5'
29931 3' -60 NC_006273.1 + 77176 0.76 0.305475
Target:  5'- -cCCGcGCCUCACGCUGcACGACCUGCa -3'
miRNA:   3'- guGGC-CGGGGUGCGAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 163989 0.76 0.319072
Target:  5'- aGCCGugucgcGCaCCCgACGCUGACAGCCCAUg -3'
miRNA:   3'- gUGGC------CG-GGG-UGCGACUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 134939 0.75 0.362555
Target:  5'- aCACCGGCgCCGCG-UGACGcgcGCCCAUa -3'
miRNA:   3'- -GUGGCCGgGGUGCgACUGU---UGGGUGa -5'
29931 3' -60 NC_006273.1 + 69425 0.75 0.370191
Target:  5'- gGCCGaCCCCugGCaUGGCGGCgCCGCUg -3'
miRNA:   3'- gUGGCcGGGGugCG-ACUGUUG-GGUGA- -5'
29931 3' -60 NC_006273.1 + 135471 0.75 0.370191
Target:  5'- --aCGGaCCCagcaACGCUGACAGCCUACg -3'
miRNA:   3'- gugGCC-GGGg---UGCGACUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 209934 0.73 0.42663
Target:  5'- aGCCGGCCa---GCUGcCAACCCACg -3'
miRNA:   3'- gUGGCCGGggugCGACuGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 98177 0.73 0.42663
Target:  5'- gCGCCGaGCgCUCGCGCUGGCGacgaGCUCGCUg -3'
miRNA:   3'- -GUGGC-CG-GGGUGCGACUGU----UGGGUGA- -5'
29931 3' -60 NC_006273.1 + 50098 0.73 0.452333
Target:  5'- aCGCCGGCCCgACGuUUGAgCGGCCgACa -3'
miRNA:   3'- -GUGGCCGGGgUGC-GACU-GUUGGgUGa -5'
29931 3' -60 NC_006273.1 + 120269 0.73 0.461087
Target:  5'- gGCCaGCUCCACGCUauacAUAGCCCGCUu -3'
miRNA:   3'- gUGGcCGGGGUGCGAc---UGUUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 38744 0.72 0.478858
Target:  5'- -uUCGGCCUCGCacCUGACGGCCUACg -3'
miRNA:   3'- guGGCCGGGGUGc-GACUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 174547 0.72 0.478858
Target:  5'- gGCUGGUgCCugGCUGACGACauuCACa -3'
miRNA:   3'- gUGGCCGgGGugCGACUGUUGg--GUGa -5'
29931 3' -60 NC_006273.1 + 94261 0.72 0.487869
Target:  5'- gCugCGGUCCgCACGCUG-CG-CCCGCUc -3'
miRNA:   3'- -GugGCCGGG-GUGCGACuGUuGGGUGA- -5'
29931 3' -60 NC_006273.1 + 40209 0.72 0.515362
Target:  5'- uCGCgGGCCCCGgGgcacaCUGcACAACCCGCg -3'
miRNA:   3'- -GUGgCCGGGGUgC-----GAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 235102 0.72 0.515362
Target:  5'- uCGCgGGCCCCGgGgcacaCUGcACAACCCGCg -3'
miRNA:   3'- -GUGgCCGGGGUgC-----GAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 271 0.72 0.515362
Target:  5'- uCGCgGGCCCCGgGgcacaCUGcACAACCCGCg -3'
miRNA:   3'- -GUGgCCGGGGUgC-----GAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 121865 0.72 0.524666
Target:  5'- uCGCC-GCCCgCGCGCcccccgGGCAACCCGCc -3'
miRNA:   3'- -GUGGcCGGG-GUGCGa-----CUGUUGGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.