miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 3' -60 NC_006273.1 + 45029 0.66 0.838876
Target:  5'- --gCGGcCCCCACgGC-GGCGGCCUGCUc -3'
miRNA:   3'- gugGCC-GGGGUG-CGaCUGUUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 20634 0.66 0.838876
Target:  5'- cCGCCGGCaCCCACGgUGcuccgGCAGaacgaggaaCCACg -3'
miRNA:   3'- -GUGGCCG-GGGUGCgAC-----UGUUg--------GGUGa -5'
29931 3' -60 NC_006273.1 + 56527 0.66 0.831024
Target:  5'- uGCCGGCCCCGCGggGu---CCC-CUu -3'
miRNA:   3'- gUGGCCGGGGUGCgaCuguuGGGuGA- -5'
29931 3' -60 NC_006273.1 + 90348 0.66 0.831024
Target:  5'- gACUGGCCguaCCgccgGCGCUGGgAugCCGCg -3'
miRNA:   3'- gUGGCCGG---GG----UGCGACUgUugGGUGa -5'
29931 3' -60 NC_006273.1 + 21217 0.66 0.831024
Target:  5'- gGCCGGCUgCCGcCGCUGugGcugCCGCUg -3'
miRNA:   3'- gUGGCCGG-GGU-GCGACugUug-GGUGA- -5'
29931 3' -60 NC_006273.1 + 193868 0.66 0.831024
Target:  5'- uGCUGGCgCCgGCGCUGcCAuCCuCACg -3'
miRNA:   3'- gUGGCCG-GGgUGCGACuGUuGG-GUGa -5'
29931 3' -60 NC_006273.1 + 196530 0.66 0.823009
Target:  5'- aACCGGCUggGCGUgGGCAcCCCGCg -3'
miRNA:   3'- gUGGCCGGggUGCGaCUGUuGGGUGa -5'
29931 3' -60 NC_006273.1 + 102086 0.66 0.823009
Target:  5'- gCGgCGGCCaCACGCgggugacGACGAgCCGCUg -3'
miRNA:   3'- -GUgGCCGGgGUGCGa------CUGUUgGGUGA- -5'
29931 3' -60 NC_006273.1 + 70073 0.66 0.823009
Target:  5'- uGCgGGCCCUgcugACGCUGuugagcucggacACAGCgCCGCg -3'
miRNA:   3'- gUGgCCGGGG----UGCGAC------------UGUUG-GGUGa -5'
29931 3' -60 NC_006273.1 + 1637 0.66 0.823009
Target:  5'- aACCGGCUggGCGUgGGCAcCCCGCg -3'
miRNA:   3'- gUGGCCGGggUGCGaCUGUuGGGUGa -5'
29931 3' -60 NC_006273.1 + 50682 0.66 0.820573
Target:  5'- aGCCGGCCCgacgaaccuugcugCACGCcGGCGuuaggucgcuACUCGCUg -3'
miRNA:   3'- gUGGCCGGG--------------GUGCGaCUGU----------UGGGUGA- -5'
29931 3' -60 NC_006273.1 + 195560 0.66 0.814837
Target:  5'- cCGCCGcGCCaCACGCUGA--GCCC-Cg -3'
miRNA:   3'- -GUGGC-CGGgGUGCGACUguUGGGuGa -5'
29931 3' -60 NC_006273.1 + 85665 0.66 0.814837
Target:  5'- aGCCGGCCCag----GACAugACCCACg -3'
miRNA:   3'- gUGGCCGGGgugcgaCUGU--UGGGUGa -5'
29931 3' -60 NC_006273.1 + 135616 0.66 0.814837
Target:  5'- aCGCCGGCCgUUACGCcGACGugAUCCAa- -3'
miRNA:   3'- -GUGGCCGG-GGUGCGaCUGU--UGGGUga -5'
29931 3' -60 NC_006273.1 + 33020 0.67 0.806516
Target:  5'- aGgUGGCgaCCGCGCUGGCGGCgCAUa -3'
miRNA:   3'- gUgGCCGg-GGUGCGACUGUUGgGUGa -5'
29931 3' -60 NC_006273.1 + 159121 0.67 0.806516
Target:  5'- cCGCUGGUgCCAcCGCcguugUGACGGCCCGg- -3'
miRNA:   3'- -GUGGCCGgGGU-GCG-----ACUGUUGGGUga -5'
29931 3' -60 NC_006273.1 + 189507 0.67 0.801454
Target:  5'- -cCCGGCCgCCGCGCUGugugagaguuccaggGCcGCCgACa -3'
miRNA:   3'- guGGCCGG-GGUGCGAC---------------UGuUGGgUGa -5'
29931 3' -60 NC_006273.1 + 90073 0.67 0.798052
Target:  5'- gCACa-GCCCCGCGgc-GCAGCCCACc -3'
miRNA:   3'- -GUGgcCGGGGUGCgacUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 161999 0.67 0.798052
Target:  5'- gGCCGuggcuGCCCgCGCGCUuugcGACucugGGCCCGCUg -3'
miRNA:   3'- gUGGC-----CGGG-GUGCGA----CUG----UUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 111127 0.67 0.798052
Target:  5'- aGCCGGCCCUcucGCGCccGcagacaccaaGCAugCCACg -3'
miRNA:   3'- gUGGCCGGGG---UGCGa-C----------UGUugGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.