miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 3' -60 NC_006273.1 + 271 0.72 0.515362
Target:  5'- uCGCgGGCCCCGgGgcacaCUGcACAACCCGCg -3'
miRNA:   3'- -GUGgCCGGGGUgC-----GAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 1637 0.66 0.823009
Target:  5'- aACCGGCUggGCGUgGGCAcCCCGCg -3'
miRNA:   3'- gUGGCCGGggUGCGaCUGUuGGGUGa -5'
29931 3' -60 NC_006273.1 + 2496 0.69 0.659203
Target:  5'- -cCCGcGCgCCGCGCUGugGGCgCGCg -3'
miRNA:   3'- guGGC-CGgGGUGCGACugUUGgGUGa -5'
29931 3' -60 NC_006273.1 + 8834 0.69 0.649505
Target:  5'- gCGCgGGCUcguucguggCCACGCUGAUAGuCCUGCUg -3'
miRNA:   3'- -GUGgCCGG---------GGUGCGACUGUU-GGGUGA- -5'
29931 3' -60 NC_006273.1 + 14359 0.66 0.838876
Target:  5'- cCGCCGGagcuCCCCGCGCUGccugugGCGGcugaggauCCCAUg -3'
miRNA:   3'- -GUGGCC----GGGGUGCGAC------UGUU--------GGGUGa -5'
29931 3' -60 NC_006273.1 + 15731 0.66 0.846559
Target:  5'- aAUCGGCUuggCgACGCUGGCGAagCCACg -3'
miRNA:   3'- gUGGCCGG---GgUGCGACUGUUg-GGUGa -5'
29931 3' -60 NC_006273.1 + 16465 0.67 0.771881
Target:  5'- gCGuuGGCCgCCuGCGUUGGCGAacaCCACg -3'
miRNA:   3'- -GUggCCGG-GG-UGCGACUGUUg--GGUGa -5'
29931 3' -60 NC_006273.1 + 16576 0.66 0.846559
Target:  5'- uGCUGGCCCUucgagguaGCGCcaGCcGCCCGCUu -3'
miRNA:   3'- gUGGCCGGGG--------UGCGacUGuUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 18398 0.7 0.598065
Target:  5'- gCACCGaCCCCacugACGCUgcggccguggccaaGACGGCCCGCg -3'
miRNA:   3'- -GUGGCcGGGG----UGCGA--------------CUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 19614 0.82 0.126317
Target:  5'- gACCGGCCCUagaaagaccaagagcAUGCUGugGGCCCACUg -3'
miRNA:   3'- gUGGCCGGGG---------------UGCGACugUUGGGUGA- -5'
29931 3' -60 NC_006273.1 + 20634 0.66 0.838876
Target:  5'- cCGCCGGCaCCCACGgUGcuccgGCAGaacgaggaaCCACg -3'
miRNA:   3'- -GUGGCCG-GGGUGCgAC-----UGUUg--------GGUGa -5'
29931 3' -60 NC_006273.1 + 21217 0.66 0.831024
Target:  5'- gGCCGGCUgCCGcCGCUGugGcugCCGCUg -3'
miRNA:   3'- gUGGCCGG-GGU-GCGACugUug-GGUGA- -5'
29931 3' -60 NC_006273.1 + 24672 0.7 0.614541
Target:  5'- aACCGGCaCCCGCGCUgccgucguccguuccGACAGCUggUGCUa -3'
miRNA:   3'- gUGGCCG-GGGUGCGA---------------CUGUUGG--GUGA- -5'
29931 3' -60 NC_006273.1 + 24721 0.67 0.780727
Target:  5'- uCGCCGGCCuCCugGCgcACAuCCCGg- -3'
miRNA:   3'- -GUGGCCGG-GGugCGacUGUuGGGUga -5'
29931 3' -60 NC_006273.1 + 25372 0.67 0.780727
Target:  5'- -cCCGGgauccaagagaCCCG-GCUGGCGACCCGCa -3'
miRNA:   3'- guGGCCg----------GGGUgCGACUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 27522 0.7 0.61066
Target:  5'- aCACUGGUCCuCACGCUGugGauagcuugcACCgGCg -3'
miRNA:   3'- -GUGGCCGGG-GUGCGACugU---------UGGgUGa -5'
29931 3' -60 NC_006273.1 + 31511 0.7 0.61066
Target:  5'- aCGCUGG-CUCACGCcGGCAACCC-CUa -3'
miRNA:   3'- -GUGGCCgGGGUGCGaCUGUUGGGuGA- -5'
29931 3' -60 NC_006273.1 + 32844 0.66 0.854066
Target:  5'- aCGCCGGCC--ACGCUG-CGGuCCCAaCUg -3'
miRNA:   3'- -GUGGCCGGggUGCGACuGUU-GGGU-GA- -5'
29931 3' -60 NC_006273.1 + 33020 0.67 0.806516
Target:  5'- aGgUGGCgaCCGCGCUGGCGGCgCAUa -3'
miRNA:   3'- gUgGCCGg-GGUGCGACUGUUGgGUGa -5'
29931 3' -60 NC_006273.1 + 36342 0.69 0.678532
Target:  5'- gCGCCaGCCCCACGCgcacgaAGCCC-CUg -3'
miRNA:   3'- -GUGGcCGGGGUGCGacug--UUGGGuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.