miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 3' -60 NC_006273.1 + 142509 0.69 0.678532
Target:  5'- --gCGGCCUUACGU--GCGACCCGCg -3'
miRNA:   3'- gugGCCGGGGUGCGacUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 219771 0.71 0.581654
Target:  5'- cCAgCGGCCUCGCGCUcGGCugcuUCCACa -3'
miRNA:   3'- -GUgGCCGGGGUGCGA-CUGuu--GGGUGa -5'
29931 3' -60 NC_006273.1 + 167332 0.7 0.639795
Target:  5'- gCGgCGGCCacggCgGCGCUGGCcgAGCCCACa -3'
miRNA:   3'- -GUgGCCGG----GgUGCGACUG--UUGGGUGa -5'
29931 3' -60 NC_006273.1 + 104112 0.69 0.646593
Target:  5'- gCACCuGGCCCUcggugugcccgaagACGCUGAUGAaCCACg -3'
miRNA:   3'- -GUGG-CCGGGG--------------UGCGACUGUUgGGUGa -5'
29931 3' -60 NC_006273.1 + 8834 0.69 0.649505
Target:  5'- gCGCgGGCUcguucguggCCACGCUGAUAGuCCUGCUg -3'
miRNA:   3'- -GUGgCCGG---------GGUGCGACUGUU-GGGUGA- -5'
29931 3' -60 NC_006273.1 + 197389 0.69 0.659203
Target:  5'- -cCCGcGCgCCGCGCUGugGGCgCGCg -3'
miRNA:   3'- guGGC-CGgGGUGCGACugUUGgGUGa -5'
29931 3' -60 NC_006273.1 + 81760 0.69 0.66888
Target:  5'- aGCCGGgCUgcgaACGCUGACGccggccACCCGCg -3'
miRNA:   3'- gUGGCCgGGg---UGCGACUGU------UGGGUGa -5'
29931 3' -60 NC_006273.1 + 36342 0.69 0.678532
Target:  5'- gCGCCaGCCCCACGCgcacgaAGCCC-CUg -3'
miRNA:   3'- -GUGGcCGGGGUGCGacug--UUGGGuGA- -5'
29931 3' -60 NC_006273.1 + 223317 0.69 0.678532
Target:  5'- -uCgGGCCCguCGgUGACAGCCgCGCUg -3'
miRNA:   3'- guGgCCGGGguGCgACUGUUGG-GUGA- -5'
29931 3' -60 NC_006273.1 + 129158 0.71 0.581654
Target:  5'- aACCGGCgCC--GCUGGCcACCCGCg -3'
miRNA:   3'- gUGGCCGgGGugCGACUGuUGGGUGa -5'
29931 3' -60 NC_006273.1 + 69238 0.71 0.56247
Target:  5'- gACCGaCCCCGCGCUGAUcAUgCGCg -3'
miRNA:   3'- gUGGCcGGGGUGCGACUGuUGgGUGa -5'
29931 3' -60 NC_006273.1 + 235102 0.72 0.515362
Target:  5'- uCGCgGGCCCCGgGgcacaCUGcACAACCCGCg -3'
miRNA:   3'- -GUGgCCGGGGUgC-----GAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 233430 0.77 0.249795
Target:  5'- uCGCCGGCCCCGcCGC--GCAACCCAg- -3'
miRNA:   3'- -GUGGCCGGGGU-GCGacUGUUGGGUga -5'
29931 3' -60 NC_006273.1 + 77176 0.76 0.305475
Target:  5'- -cCCGcGCCUCACGCUGcACGACCUGCa -3'
miRNA:   3'- guGGC-CGGGGUGCGAC-UGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 134939 0.75 0.362555
Target:  5'- aCACCGGCgCCGCG-UGACGcgcGCCCAUa -3'
miRNA:   3'- -GUGGCCGgGGUGCgACUGU---UGGGUGa -5'
29931 3' -60 NC_006273.1 + 69425 0.75 0.370191
Target:  5'- gGCCGaCCCCugGCaUGGCGGCgCCGCUg -3'
miRNA:   3'- gUGGCcGGGGugCG-ACUGUUG-GGUGA- -5'
29931 3' -60 NC_006273.1 + 209934 0.73 0.42663
Target:  5'- aGCCGGCCa---GCUGcCAACCCACg -3'
miRNA:   3'- gUGGCCGGggugCGACuGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 38744 0.72 0.478858
Target:  5'- -uUCGGCCUCGCacCUGACGGCCUACg -3'
miRNA:   3'- guGGCCGGGGUGc-GACUGUUGGGUGa -5'
29931 3' -60 NC_006273.1 + 94261 0.72 0.487869
Target:  5'- gCugCGGUCCgCACGCUG-CG-CCCGCUc -3'
miRNA:   3'- -GugGCCGGG-GUGCGACuGUuGGGUGA- -5'
29931 3' -60 NC_006273.1 + 271 0.72 0.515362
Target:  5'- uCGCgGGCCCCGgGgcacaCUGcACAACCCGCg -3'
miRNA:   3'- -GUGgCCGGGGUgC-----GAC-UGUUGGGUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.