miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 5' -54.3 NC_006273.1 + 43915 0.66 0.974058
Target:  5'- -cGGCGGCGCCgaCUUCcaccauCAGGCCa -3'
miRNA:   3'- aaUCGUCGCGG--GGAGaauu--GUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 32713 0.66 0.973255
Target:  5'- -cAGC-GCGCUCCacgUCUucaaaguagcugugUAGCAGGCCGc -3'
miRNA:   3'- aaUCGuCGCGGGG---AGA--------------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 39638 0.66 0.973255
Target:  5'- uUUAGCGGCGacgcgcucaacuguCCgCUUCUcAACGAGCCc -3'
miRNA:   3'- -AAUCGUCGC--------------GG-GGAGAaUUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 167134 0.66 0.97131
Target:  5'- cUAGCAGCGUuuUgaa-GACGGGCCGc -3'
miRNA:   3'- aAUCGUCGCGggGagaaUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 169826 0.66 0.97131
Target:  5'- -cGGCAGgGCCCCUUcgccGCA-GCUGu -3'
miRNA:   3'- aaUCGUCgCGGGGAGaau-UGUuCGGC- -5'
29931 5' -54.3 NC_006273.1 + 31471 0.66 0.97131
Target:  5'- gUGGCuGCGCCuCCUCgucGGCcuGGGCUGc -3'
miRNA:   3'- aAUCGuCGCGG-GGAGaa-UUG--UUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 209432 0.66 0.97131
Target:  5'- -cAGCGGCGUCUCg--UAGCGuacAGCCa -3'
miRNA:   3'- aaUCGUCGCGGGGagaAUUGU---UCGGc -5'
29931 5' -54.3 NC_006273.1 + 55668 0.66 0.971024
Target:  5'- -cAGCGGCGCguaguugcgcaggCCCUCcu-GCAcgaAGCCGc -3'
miRNA:   3'- aaUCGUCGCG-------------GGGAGaauUGU---UCGGC- -5'
29931 5' -54.3 NC_006273.1 + 87858 0.66 0.970154
Target:  5'- -cGGC-GCGCCCCcaUCgccucccgagcgAGCGGGCCGc -3'
miRNA:   3'- aaUCGuCGCGGGG--AGaa----------UUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 44440 0.66 0.969564
Target:  5'- -gGGCAccGUGCCCCgaggcggcgacgggCUagcguaUAACAAGCCGc -3'
miRNA:   3'- aaUCGU--CGCGGGGa-------------GA------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 44870 0.66 0.968359
Target:  5'- -gAGUGGCGCCCCggCUUcauuAUAAcGCCa -3'
miRNA:   3'- aaUCGUCGCGGGGa-GAAu---UGUU-CGGc -5'
29931 5' -54.3 NC_006273.1 + 105167 0.66 0.968359
Target:  5'- --cGCGGCGCCgcggCCUCgcccAGguAGCCGg -3'
miRNA:   3'- aauCGUCGCGG----GGAGaa--UUguUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 161631 0.67 0.958225
Target:  5'- cUGGCGGCGCCgCUgCcgGGCcucGGCCGc -3'
miRNA:   3'- aAUCGUCGCGGgGA-GaaUUGu--UCGGC- -5'
29931 5' -54.3 NC_006273.1 + 39209 0.67 0.958225
Target:  5'- -gAGaCGGCGCCCUUUg-GACGGGUCa -3'
miRNA:   3'- aaUC-GUCGCGGGGAGaaUUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 100399 0.67 0.95035
Target:  5'- gUAGCcaGGCGCUcauuugaccgggCUUCUUGACuAGCCGu -3'
miRNA:   3'- aAUCG--UCGCGG------------GGAGAAUUGuUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 208226 0.67 0.946064
Target:  5'- --uGCGGCGCCUCUCUcAugGAuCCa -3'
miRNA:   3'- aauCGUCGCGGGGAGAaUugUUcGGc -5'
29931 5' -54.3 NC_006273.1 + 134519 0.67 0.941542
Target:  5'- gUGGCGuCGCCCUUCUccGugAAGCUGu -3'
miRNA:   3'- aAUCGUcGCGGGGAGAa-UugUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 204132 0.67 0.941542
Target:  5'- -aGGUAGCGUCUCUCc--GCAaacAGCCGu -3'
miRNA:   3'- aaUCGUCGCGGGGAGaauUGU---UCGGC- -5'
29931 5' -54.3 NC_006273.1 + 9767 0.67 0.936781
Target:  5'- -aGGCAG-GCCUgUUUU-ACAGGCCGa -3'
miRNA:   3'- aaUCGUCgCGGGgAGAAuUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 117545 0.67 0.936781
Target:  5'- -cGGCAGCGCCCgUCaugUAuccCGGcGCCGu -3'
miRNA:   3'- aaUCGUCGCGGGgAGa--AUu--GUU-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.