Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29931 | 5' | -54.3 | NC_006273.1 | + | 63491 | 1.07 | 0.006744 |
Target: 5'- gUUAGCAGCGCCCCUCUUAACAAGCCGa -3' miRNA: 3'- -AAUCGUCGCGGGGAGAAUUGUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 122249 | 0.75 | 0.594388 |
Target: 5'- -gAGCGGCGCgCCCUCU--GC-GGCCGc -3' miRNA: 3'- aaUCGUCGCG-GGGAGAauUGuUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 32612 | 0.74 | 0.635467 |
Target: 5'- -cAGCAGCGCgCggCUCacgUAGCAGGCCGa -3' miRNA: 3'- aaUCGUCGCGgG--GAGa--AUUGUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 178549 | 0.73 | 0.706916 |
Target: 5'- gUAGCGGCaGCCUCUCUucgcUGGCuaauGCCGg -3' miRNA: 3'- aAUCGUCG-CGGGGAGA----AUUGuu--CGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 56108 | 0.72 | 0.736759 |
Target: 5'- cUGGCGGCGCCgCCggauuucgUCgaAACGGGCCGc -3' miRNA: 3'- aAUCGUCGCGG-GG--------AGaaUUGUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 60427 | 0.72 | 0.746535 |
Target: 5'- -gGGCAGCgGCCCCUCcu--CGAGCUc -3' miRNA: 3'- aaUCGUCG-CGGGGAGaauuGUUCGGc -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 179181 | 0.72 | 0.765773 |
Target: 5'- --cGCAGCGCCagccuuagcUUUCUUGACuGGCCGg -3' miRNA: 3'- aauCGUCGCGG---------GGAGAAUUGuUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 47732 | 0.71 | 0.784532 |
Target: 5'- aUAGCaugaugaucgagGGCGCCUCUCggcaGACGGGCCu -3' miRNA: 3'- aAUCG------------UCGCGGGGAGaa--UUGUUCGGc -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 139516 | 0.71 | 0.793709 |
Target: 5'- --cGUAGCGCUCCuggaUCUUGGCG-GCCGa -3' miRNA: 3'- aauCGUCGCGGGG----AGAAUUGUuCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 173083 | 0.71 | 0.823756 |
Target: 5'- gUUAGCGGCGCCCUugcUCacaucaugcagcuccUUAauACAAGCCa -3' miRNA: 3'- -AAUCGUCGCGGGG---AG---------------AAU--UGUUCGGc -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 167991 | 0.7 | 0.828856 |
Target: 5'- -cAGCAGcCGCUCCUCUcguuuCGGGCCc -3' miRNA: 3'- aaUCGUC-GCGGGGAGAauu--GUUCGGc -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 86843 | 0.7 | 0.845378 |
Target: 5'- -gGGCGGCGCCCgUCUcaAAgAGGuCCGg -3' miRNA: 3'- aaUCGUCGCGGGgAGAa-UUgUUC-GGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 96162 | 0.7 | 0.85335 |
Target: 5'- -gAGCAGCGCgCCUCcUAccAgAAGCUGg -3' miRNA: 3'- aaUCGUCGCGgGGAGaAU--UgUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 30673 | 0.7 | 0.861119 |
Target: 5'- -cAGCGGgCGCgCCUCggGGCucGCCGg -3' miRNA: 3'- aaUCGUC-GCGgGGAGaaUUGuuCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 133497 | 0.69 | 0.876025 |
Target: 5'- cUGGCGGCGgCCCgggCUUuguuAGCCGa -3' miRNA: 3'- aAUCGUCGCgGGGa--GAAuuguUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 70810 | 0.69 | 0.883151 |
Target: 5'- -cGGCAGCGCcagcggccuggCCUUCggcacgcUGGCGGGCCGa -3' miRNA: 3'- aaUCGUCGCG-----------GGGAGa------AUUGUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 163652 | 0.69 | 0.890051 |
Target: 5'- -aAGaCGGCGCCCCgCUguguCAGGCUGc -3' miRNA: 3'- aaUC-GUCGCGGGGaGAauu-GUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 33665 | 0.69 | 0.892748 |
Target: 5'- -cAGCAGCGCagCCUCgccuuuaaacagccUGAUGAGCCGc -3' miRNA: 3'- aaUCGUCGCGg-GGAGa-------------AUUGUUCGGC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 142189 | 0.69 | 0.896723 |
Target: 5'- -cGGCAGCGaCCCCUCggacAGCGugAGCgGc -3' miRNA: 3'- aaUCGUCGC-GGGGAGaa--UUGU--UCGgC- -5' |
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29931 | 5' | -54.3 | NC_006273.1 | + | 48090 | 0.69 | 0.896723 |
Target: 5'- -gAGCAGcCGCCCCggc-AACGAcGCCGc -3' miRNA: 3'- aaUCGUC-GCGGGGagaaUUGUU-CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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