miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 5' -54.3 NC_006273.1 + 9767 0.67 0.936781
Target:  5'- -aGGCAG-GCCUgUUUU-ACAGGCCGa -3'
miRNA:   3'- aaUCGUCgCGGGgAGAAuUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 30673 0.7 0.861119
Target:  5'- -cAGCGGgCGCgCCUCggGGCucGCCGg -3'
miRNA:   3'- aaUCGUC-GCGgGGAGaaUUGuuCGGC- -5'
29931 5' -54.3 NC_006273.1 + 31471 0.66 0.97131
Target:  5'- gUGGCuGCGCCuCCUCgucGGCcuGGGCUGc -3'
miRNA:   3'- aAUCGuCGCGG-GGAGaa-UUG--UUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 32612 0.74 0.635467
Target:  5'- -cAGCAGCGCgCggCUCacgUAGCAGGCCGa -3'
miRNA:   3'- aaUCGUCGCGgG--GAGa--AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 32713 0.66 0.973255
Target:  5'- -cAGC-GCGCUCCacgUCUucaaaguagcugugUAGCAGGCCGc -3'
miRNA:   3'- aaUCGuCGCGGGG---AGA--------------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 33665 0.69 0.892748
Target:  5'- -cAGCAGCGCagCCUCgccuuuaaacagccUGAUGAGCCGc -3'
miRNA:   3'- aaUCGUCGCGg-GGAGa-------------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 34686 0.68 0.91533
Target:  5'- -gAGCAGCGgaCCUUCggAGCcaugAAGCCGg -3'
miRNA:   3'- aaUCGUCGCg-GGGAGaaUUG----UUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 39209 0.67 0.958225
Target:  5'- -gAGaCGGCGCCCUUUg-GACGGGUCa -3'
miRNA:   3'- aaUC-GUCGCGGGGAGaaUUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 39638 0.66 0.973255
Target:  5'- uUUAGCGGCGacgcgcucaacuguCCgCUUCUcAACGAGCCc -3'
miRNA:   3'- -AAUCGUCGC--------------GG-GGAGAaUUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 43915 0.66 0.974058
Target:  5'- -cGGCGGCGCCgaCUUCcaccauCAGGCCa -3'
miRNA:   3'- aaUCGUCGCGG--GGAGaauu--GUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 44440 0.66 0.969564
Target:  5'- -gGGCAccGUGCCCCgaggcggcgacgggCUagcguaUAACAAGCCGc -3'
miRNA:   3'- aaUCGU--CGCGGGGa-------------GA------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 44870 0.66 0.968359
Target:  5'- -gAGUGGCGCCCCggCUUcauuAUAAcGCCa -3'
miRNA:   3'- aaUCGUCGCGGGGa-GAAu---UGUU-CGGc -5'
29931 5' -54.3 NC_006273.1 + 47732 0.71 0.784532
Target:  5'- aUAGCaugaugaucgagGGCGCCUCUCggcaGACGGGCCu -3'
miRNA:   3'- aAUCG------------UCGCGGGGAGaa--UUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 48090 0.69 0.896723
Target:  5'- -gAGCAGcCGCCCCggc-AACGAcGCCGc -3'
miRNA:   3'- aaUCGUC-GCGGGGagaaUUGUU-CGGC- -5'
29931 5' -54.3 NC_006273.1 + 55668 0.66 0.971024
Target:  5'- -cAGCGGCGCguaguugcgcaggCCCUCcu-GCAcgaAGCCGc -3'
miRNA:   3'- aaUCGUCGCG-------------GGGAGaauUGU---UCGGC- -5'
29931 5' -54.3 NC_006273.1 + 56108 0.72 0.736759
Target:  5'- cUGGCGGCGCCgCCggauuucgUCgaAACGGGCCGc -3'
miRNA:   3'- aAUCGUCGCGG-GG--------AGaaUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 60427 0.72 0.746535
Target:  5'- -gGGCAGCgGCCCCUCcu--CGAGCUc -3'
miRNA:   3'- aaUCGUCG-CGGGGAGaauuGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 63491 1.07 0.006744
Target:  5'- gUUAGCAGCGCCCCUCUUAACAAGCCGa -3'
miRNA:   3'- -AAUCGUCGCGGGGAGAAUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 70810 0.69 0.883151
Target:  5'- -cGGCAGCGCcagcggccuggCCUUCggcacgcUGGCGGGCCGa -3'
miRNA:   3'- aaUCGUCGCG-----------GGGAGa------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 86843 0.7 0.845378
Target:  5'- -gGGCGGCGCCCgUCUcaAAgAGGuCCGg -3'
miRNA:   3'- aaUCGUCGCGGGgAGAa-UUgUUC-GGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.