miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29931 5' -54.3 NC_006273.1 + 39209 0.67 0.958225
Target:  5'- -gAGaCGGCGCCCUUUg-GACGGGUCa -3'
miRNA:   3'- aaUC-GUCGCGGGGAGaaUUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 142189 0.69 0.896723
Target:  5'- -cGGCAGCGaCCCCUCggacAGCGugAGCgGc -3'
miRNA:   3'- aaUCGUCGC-GGGGAGaa--UUGU--UCGgC- -5'
29931 5' -54.3 NC_006273.1 + 96028 0.68 0.921055
Target:  5'- -gAGCGGCGCCa-UCUUGgaggagggGCGAGUCGc -3'
miRNA:   3'- aaUCGUCGCGGggAGAAU--------UGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 163035 0.68 0.926538
Target:  5'- -cAGCAGCGCCCacagCgcgGGCGAGaCGg -3'
miRNA:   3'- aaUCGUCGCGGGga--Gaa-UUGUUCgGC- -5'
29931 5' -54.3 NC_006273.1 + 128420 0.68 0.93178
Target:  5'- -aAGCuguGCGCCCCggcCUgcgaaAGCGAGUCGu -3'
miRNA:   3'- aaUCGu--CGCGGGGa--GAa----UUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 117545 0.67 0.936781
Target:  5'- -cGGCAGCGCCCgUCaugUAuccCGGcGCCGu -3'
miRNA:   3'- aaUCGUCGCGGGgAGa--AUu--GUU-CGGC- -5'
29931 5' -54.3 NC_006273.1 + 134519 0.67 0.941542
Target:  5'- gUGGCGuCGCCCUUCUccGugAAGCUGu -3'
miRNA:   3'- aAUCGUcGCGGGGAGAa-UugUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 204132 0.67 0.941542
Target:  5'- -aGGUAGCGUCUCUCc--GCAaacAGCCGu -3'
miRNA:   3'- aaUCGUCGCGGGGAGaauUGU---UCGGC- -5'
29931 5' -54.3 NC_006273.1 + 100399 0.67 0.95035
Target:  5'- gUAGCcaGGCGCUcauuugaccgggCUUCUUGACuAGCCGu -3'
miRNA:   3'- aAUCG--UCGCGG------------GGAGAAUUGuUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 48090 0.69 0.896723
Target:  5'- -gAGCAGcCGCCCCggc-AACGAcGCCGc -3'
miRNA:   3'- aaUCGUC-GCGGGGagaaUUGUU-CGGC- -5'
29931 5' -54.3 NC_006273.1 + 33665 0.69 0.892748
Target:  5'- -cAGCAGCGCagCCUCgccuuuaaacagccUGAUGAGCCGc -3'
miRNA:   3'- aaUCGUCGCGg-GGAGa-------------AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 133497 0.69 0.876025
Target:  5'- cUGGCGGCGgCCCgggCUUuguuAGCCGa -3'
miRNA:   3'- aAUCGUCGCgGGGa--GAAuuguUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 32612 0.74 0.635467
Target:  5'- -cAGCAGCGCgCggCUCacgUAGCAGGCCGa -3'
miRNA:   3'- aaUCGUCGCGgG--GAGa--AUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 56108 0.72 0.736759
Target:  5'- cUGGCGGCGCCgCCggauuucgUCgaAACGGGCCGc -3'
miRNA:   3'- aAUCGUCGCGG-GG--------AGaaUUGUUCGGC- -5'
29931 5' -54.3 NC_006273.1 + 60427 0.72 0.746535
Target:  5'- -gGGCAGCgGCCCCUCcu--CGAGCUc -3'
miRNA:   3'- aaUCGUCG-CGGGGAGaauuGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 47732 0.71 0.784532
Target:  5'- aUAGCaugaugaucgagGGCGCCUCUCggcaGACGGGCCu -3'
miRNA:   3'- aAUCG------------UCGCGGGGAGaa--UUGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 139516 0.71 0.793709
Target:  5'- --cGUAGCGCUCCuggaUCUUGGCG-GCCGa -3'
miRNA:   3'- aauCGUCGCGGGG----AGAAUUGUuCGGC- -5'
29931 5' -54.3 NC_006273.1 + 173083 0.71 0.823756
Target:  5'- gUUAGCGGCGCCCUugcUCacaucaugcagcuccUUAauACAAGCCa -3'
miRNA:   3'- -AAUCGUCGCGGGG---AG---------------AAU--UGUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 167991 0.7 0.828856
Target:  5'- -cAGCAGcCGCUCCUCUcguuuCGGGCCc -3'
miRNA:   3'- aaUCGUC-GCGGGGAGAauu--GUUCGGc -5'
29931 5' -54.3 NC_006273.1 + 30673 0.7 0.861119
Target:  5'- -cAGCGGgCGCgCCUCggGGCucGCCGg -3'
miRNA:   3'- aaUCGUC-GCGgGGAGaaUUGuuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.