miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29932 5' -58.8 NC_006273.1 + 193354 0.66 0.870547
Target:  5'- aAACCgGgCGCCUCccGGAGGCucuuuGGCu -3'
miRNA:   3'- -UUGGgUgGCGGAGa-CCUCCGuuc--UCG- -5'
29932 5' -58.8 NC_006273.1 + 36081 0.66 0.870547
Target:  5'- uAGCCCACgacgaGCCUgucgGGAGacaCAAGAGCg -3'
miRNA:   3'- -UUGGGUGg----CGGAga--CCUCc--GUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 61217 0.66 0.870547
Target:  5'- cAGCCCAgCGUCUC--GAGGCGgcGGuGCa -3'
miRNA:   3'- -UUGGGUgGCGGAGacCUCCGU--UCuCG- -5'
29932 5' -58.8 NC_006273.1 + 141158 0.66 0.870547
Target:  5'- gAACCCuGCCGCggacugCgccgGGGGGCGGcGGGCa -3'
miRNA:   3'- -UUGGG-UGGCGga----Ga---CCUCCGUU-CUCG- -5'
29932 5' -58.8 NC_006273.1 + 202631 0.66 0.870547
Target:  5'- cGACUCGCUGCCgcaguugCUGGAGcGCGGccuGCu -3'
miRNA:   3'- -UUGGGUGGCGGa------GACCUC-CGUUcu-CG- -5'
29932 5' -58.8 NC_006273.1 + 3708 0.66 0.868401
Target:  5'- gGAUUCACCGUuuucucucuucucuCUCUacauacagaccgGGuGGCAGGAGCg -3'
miRNA:   3'- -UUGGGUGGCG--------------GAGA------------CCuCCGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 140858 0.66 0.863325
Target:  5'- uGCgCgGCCGCUUCUcGGGGcGCGAGGuGCc -3'
miRNA:   3'- uUG-GgUGGCGGAGA-CCUC-CGUUCU-CG- -5'
29932 5' -58.8 NC_006273.1 + 150022 0.66 0.863325
Target:  5'- uGCUCACgGCUUgCgUGGAGGUcuGGGCg -3'
miRNA:   3'- uUGGGUGgCGGA-G-ACCUCCGuuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 37457 0.66 0.863325
Target:  5'- uGCCCcCCGUCUC---GGGCAcccgGGAGCg -3'
miRNA:   3'- uUGGGuGGCGGAGaccUCCGU----UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 151337 0.66 0.863325
Target:  5'- cGCCCGCCGCUUCgcGGcucauuuGGCGccGGCg -3'
miRNA:   3'- uUGGGUGGCGGAGa-CCu------CCGUucUCG- -5'
29932 5' -58.8 NC_006273.1 + 87423 0.66 0.863325
Target:  5'- cGGCuCCuCCGCCUCgggcgacGGGGGCucGGAGa -3'
miRNA:   3'- -UUG-GGuGGCGGAGa------CCUCCGu-UCUCg -5'
29932 5' -58.8 NC_006273.1 + 152809 0.66 0.862591
Target:  5'- cGACCCgcuACCGCCcuaccucaagggUCUGGAcgaccucaugagcGGCcuGGGCg -3'
miRNA:   3'- -UUGGG---UGGCGG------------AGACCU-------------CCGuuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 169714 0.66 0.853645
Target:  5'- uACCCGCCGCgUgcaacguccaggcgCUGGuguuGGCAGGcaacGGCg -3'
miRNA:   3'- uUGGGUGGCGgA--------------GACCu---CCGUUC----UCG- -5'
29932 5' -58.8 NC_006273.1 + 130204 0.66 0.8483
Target:  5'- --aCCGCCGUCUCcGGcuaccuGGGCGAGGccGCg -3'
miRNA:   3'- uugGGUGGCGGAGaCC------UCCGUUCU--CG- -5'
29932 5' -58.8 NC_006273.1 + 115611 0.66 0.84051
Target:  5'- gAACCgACaGCagUUUGGAGGCAGG-GCa -3'
miRNA:   3'- -UUGGgUGgCGg-AGACCUCCGUUCuCG- -5'
29932 5' -58.8 NC_006273.1 + 194761 0.66 0.84051
Target:  5'- uGCCCccCCGUCUCcGGugaaAGGCcGGGGCa -3'
miRNA:   3'- uUGGGu-GGCGGAGaCC----UCCGuUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 197180 0.66 0.84051
Target:  5'- -uUCCGCCGUCUCcGGAugagcggccgcGGCGcGGGCu -3'
miRNA:   3'- uuGGGUGGCGGAGaCCU-----------CCGUuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 77400 0.67 0.824404
Target:  5'- uGCCCACCGCCUCcgacgccaUGGuGGCc----- -3'
miRNA:   3'- uUGGGUGGCGGAG--------ACCuCCGuucucg -5'
29932 5' -58.8 NC_006273.1 + 118613 0.67 0.816102
Target:  5'- -uCgCAgCGCCggCUGGAGaGCGAGAGg -3'
miRNA:   3'- uuGgGUgGCGGa-GACCUC-CGUUCUCg -5'
29932 5' -58.8 NC_006273.1 + 221422 0.67 0.815263
Target:  5'- cGCCCcguccaACgCGCCUgUGGAGggccaaucggaccGCGGGAGCu -3'
miRNA:   3'- uUGGG------UG-GCGGAgACCUC-------------CGUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.