miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29932 5' -58.8 NC_006273.1 + 101702 0.67 0.790289
Target:  5'- --aCCGCUGCCg--GGGGGCGGGucaccGGCg -3'
miRNA:   3'- uugGGUGGCGGagaCCUCCGUUC-----UCG- -5'
29932 5' -58.8 NC_006273.1 + 144543 0.67 0.790289
Target:  5'- cGCgCAgCGCUUUugUGGAGGCGcgAGGGCu -3'
miRNA:   3'- uUGgGUgGCGGAG--ACCUCCGU--UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 173472 0.67 0.790289
Target:  5'- -cUCCGCCGCCgucgugCUGGugucGCAGGaAGCg -3'
miRNA:   3'- uuGGGUGGCGGa-----GACCuc--CGUUC-UCG- -5'
29932 5' -58.8 NC_006273.1 + 156324 0.68 0.7724
Target:  5'- uGGCCUgacGCCGCaggCUCUGGuGGCGcguGGGCc -3'
miRNA:   3'- -UUGGG---UGGCG---GAGACCuCCGUu--CUCG- -5'
29932 5' -58.8 NC_006273.1 + 190941 0.68 0.7724
Target:  5'- uAGCCCgucGCCGCCUC-GG-GGCAcGGuGCc -3'
miRNA:   3'- -UUGGG---UGGCGGAGaCCuCCGU-UCuCG- -5'
29932 5' -58.8 NC_006273.1 + 72892 0.68 0.7724
Target:  5'- gGACUCACCGUCguUCUcGGAGGaGGGAGg -3'
miRNA:   3'- -UUGGGUGGCGG--AGA-CCUCCgUUCUCg -5'
29932 5' -58.8 NC_006273.1 + 141068 0.68 0.7724
Target:  5'- gGACCggCGCCggGCCUCggccggggagggUGGGGGguAGGGCg -3'
miRNA:   3'- -UUGG--GUGG--CGGAG------------ACCUCCguUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 60243 0.68 0.744709
Target:  5'- -gUCCACCGCgaCUGGGcacGGCGGGAccGCu -3'
miRNA:   3'- uuGGGUGGCGgaGACCU---CCGUUCU--CG- -5'
29932 5' -58.8 NC_006273.1 + 131078 0.68 0.744709
Target:  5'- cGCUCAUCGCCagUCUGGAcgaGGcCGAGAcGCg -3'
miRNA:   3'- uUGGGUGGCGG--AGACCU---CC-GUUCU-CG- -5'
29932 5' -58.8 NC_006273.1 + 179607 0.68 0.744709
Target:  5'- cGCCCACCGCuacccguaCUCauc-GGCGAGGGCg -3'
miRNA:   3'- uUGGGUGGCG--------GAGaccuCCGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 159335 0.68 0.735283
Target:  5'- --gUCACCGuCCUCUGGAGG-AGGcacGGCg -3'
miRNA:   3'- uugGGUGGC-GGAGACCUCCgUUC---UCG- -5'
29932 5' -58.8 NC_006273.1 + 201102 0.69 0.725773
Target:  5'- cACCCugUGCCuguuUCUGGAGcccgAGGAGCg -3'
miRNA:   3'- uUGGGugGCGG----AGACCUCcg--UUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 133281 0.69 0.725773
Target:  5'- gAugCCGCCGUCUC-GGGcGCAAGcGGCg -3'
miRNA:   3'- -UugGGUGGCGGAGaCCUcCGUUC-UCG- -5'
29932 5' -58.8 NC_006273.1 + 112181 0.69 0.716188
Target:  5'- gGACCCuCCGUCUUUGGAcGauuGGAGCu -3'
miRNA:   3'- -UUGGGuGGCGGAGACCUcCgu-UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 211703 0.69 0.716188
Target:  5'- gAAUCUcgGCgGgCCUCUGGGGGCcgcacGGAGCg -3'
miRNA:   3'- -UUGGG--UGgC-GGAGACCUCCGu----UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 190360 0.69 0.716188
Target:  5'- cAGgCCGCCGCCg-UGGGGGCcgcGGAGg -3'
miRNA:   3'- -UUgGGUGGCGGagACCUCCGu--UCUCg -5'
29932 5' -58.8 NC_006273.1 + 179077 0.69 0.716188
Target:  5'- cAACCCuCUGCUUUUGcGGGCAAGcGCg -3'
miRNA:   3'- -UUGGGuGGCGGAGACcUCCGUUCuCG- -5'
29932 5' -58.8 NC_006273.1 + 96659 0.69 0.716188
Target:  5'- cGCCCGaucCCGCCUCcGGuAGGCGAuuuGCa -3'
miRNA:   3'- uUGGGU---GGCGGAGaCC-UCCGUUcu-CG- -5'
29932 5' -58.8 NC_006273.1 + 197387 0.69 0.706536
Target:  5'- cACCCGCgCGCCgcgCUGuGGGcGCGcGAGCc -3'
miRNA:   3'- uUGGGUG-GCGGa--GAC-CUC-CGUuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 2494 0.69 0.706536
Target:  5'- cACCCGCgCGCCgcgCUGuGGGcGCGcGAGCc -3'
miRNA:   3'- uUGGGUG-GCGGa--GAC-CUC-CGUuCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.