miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29932 5' -58.8 NC_006273.1 + 2494 0.69 0.706536
Target:  5'- cACCCGCgCGCCgcgCUGuGGGcGCGcGAGCc -3'
miRNA:   3'- uUGGGUG-GCGGa--GAC-CUC-CGUuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 3708 0.66 0.868401
Target:  5'- gGAUUCACCGUuuucucucuucucuCUCUacauacagaccgGGuGGCAGGAGCg -3'
miRNA:   3'- -UUGGGUGGCG--------------GAGA------------CCuCCGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 4923 0.76 0.341492
Target:  5'- cGCCCGCCgggGCUUCUGGAGaacGCcGGAGCa -3'
miRNA:   3'- uUGGGUGG---CGGAGACCUC---CGuUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 36081 0.66 0.870547
Target:  5'- uAGCCCACgacgaGCCUgucgGGAGacaCAAGAGCg -3'
miRNA:   3'- -UUGGGUGg----CGGAga--CCUCc--GUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 37457 0.66 0.863325
Target:  5'- uGCCCcCCGUCUC---GGGCAcccgGGAGCg -3'
miRNA:   3'- uUGGGuGGCGGAGaccUCCGU----UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 60243 0.68 0.744709
Target:  5'- -gUCCACCGCgaCUGGGcacGGCGGGAccGCu -3'
miRNA:   3'- uuGGGUGGCGgaGACCU---CCGUUCU--CG- -5'
29932 5' -58.8 NC_006273.1 + 61217 0.66 0.870547
Target:  5'- cAGCCCAgCGUCUC--GAGGCGgcGGuGCa -3'
miRNA:   3'- -UUGGGUgGCGGAGacCUCCGU--UCuCG- -5'
29932 5' -58.8 NC_006273.1 + 63189 1.1 0.00197
Target:  5'- gAACCCACCGCCUCUGGAGGCAAGAGCa -3'
miRNA:   3'- -UUGGGUGGCGGAGACCUCCGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 72892 0.68 0.7724
Target:  5'- gGACUCACCGUCguUCUcGGAGGaGGGAGg -3'
miRNA:   3'- -UUGGGUGGCGG--AGA-CCUCCgUUCUCg -5'
29932 5' -58.8 NC_006273.1 + 73729 0.69 0.687062
Target:  5'- -cCCCGCCGCCaugGGuGGCGGcGGCg -3'
miRNA:   3'- uuGGGUGGCGGagaCCuCCGUUcUCG- -5'
29932 5' -58.8 NC_006273.1 + 77400 0.67 0.824404
Target:  5'- uGCCCACCGCCUCcgacgccaUGGuGGCc----- -3'
miRNA:   3'- uUGGGUGGCGGAG--------ACCuCCGuucucg -5'
29932 5' -58.8 NC_006273.1 + 87423 0.66 0.863325
Target:  5'- cGGCuCCuCCGCCUCgggcgacGGGGGCucGGAGa -3'
miRNA:   3'- -UUG-GGuGGCGGAGa------CCUCCGu-UCUCg -5'
29932 5' -58.8 NC_006273.1 + 94357 0.72 0.520591
Target:  5'- -uCCCACCGCC-CUGGA-GCAccauccGGGGCc -3'
miRNA:   3'- uuGGGUGGCGGaGACCUcCGU------UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 96659 0.69 0.716188
Target:  5'- cGCCCGaucCCGCCUCcGGuAGGCGAuuuGCa -3'
miRNA:   3'- uUGGGU---GGCGGAGaCC-UCCGUUcu-CG- -5'
29932 5' -58.8 NC_006273.1 + 101702 0.67 0.790289
Target:  5'- --aCCGCUGCCg--GGGGGCGGGucaccGGCg -3'
miRNA:   3'- uugGGUGGCGGagaCCUCCGUUC-----UCG- -5'
29932 5' -58.8 NC_006273.1 + 104239 0.72 0.549333
Target:  5'- cACCuCGCCGCCguguucGGGCGAGAGCa -3'
miRNA:   3'- uUGG-GUGGCGGagacc-UCCGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 112181 0.69 0.716188
Target:  5'- gGACCCuCCGUCUUUGGAcGauuGGAGCu -3'
miRNA:   3'- -UUGGGuGGCGGAGACCUcCgu-UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 115611 0.66 0.84051
Target:  5'- gAACCgACaGCagUUUGGAGGCAGG-GCa -3'
miRNA:   3'- -UUGGgUGgCGg-AGACCUCCGUUCuCG- -5'
29932 5' -58.8 NC_006273.1 + 118613 0.67 0.816102
Target:  5'- -uCgCAgCGCCggCUGGAGaGCGAGAGg -3'
miRNA:   3'- uuGgGUgGCGGa-GACCUC-CGUUCUCg -5'
29932 5' -58.8 NC_006273.1 + 129842 0.72 0.51114
Target:  5'- uGACaUCACCGCCUCccGAGGCAcgucGGGGCu -3'
miRNA:   3'- -UUG-GGUGGCGGAGacCUCCGU----UCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.