miRNA display CGI


Results 1 - 20 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29932 5' -58.8 NC_006273.1 + 37457 0.66 0.863325
Target:  5'- uGCCCcCCGUCUC---GGGCAcccgGGAGCg -3'
miRNA:   3'- uUGGGuGGCGGAGaccUCCGU----UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 159335 0.68 0.735283
Target:  5'- --gUCACCGuCCUCUGGAGG-AGGcacGGCg -3'
miRNA:   3'- uugGGUGGC-GGAGACCUCCgUUC---UCG- -5'
29932 5' -58.8 NC_006273.1 + 60243 0.68 0.744709
Target:  5'- -gUCCACCGCgaCUGGGcacGGCGGGAccGCu -3'
miRNA:   3'- uuGGGUGGCGgaGACCU---CCGUUCU--CG- -5'
29932 5' -58.8 NC_006273.1 + 190941 0.68 0.7724
Target:  5'- uAGCCCgucGCCGCCUC-GG-GGCAcGGuGCc -3'
miRNA:   3'- -UUGGG---UGGCGGAGaCCuCCGU-UCuCG- -5'
29932 5' -58.8 NC_006273.1 + 101702 0.67 0.790289
Target:  5'- --aCCGCUGCCg--GGGGGCGGGucaccGGCg -3'
miRNA:   3'- uugGGUGGCGGagaCCUCCGUUC-----UCG- -5'
29932 5' -58.8 NC_006273.1 + 221422 0.67 0.815263
Target:  5'- cGCCCcguccaACgCGCCUgUGGAGggccaaucggaccGCGGGAGCu -3'
miRNA:   3'- uUGGG------UG-GCGGAgACCUC-------------CGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 77400 0.67 0.824404
Target:  5'- uGCCCACCGCCUCcgacgccaUGGuGGCc----- -3'
miRNA:   3'- uUGGGUGGCGGAG--------ACCuCCGuucucg -5'
29932 5' -58.8 NC_006273.1 + 130204 0.66 0.8483
Target:  5'- --aCCGCCGUCUCcGGcuaccuGGGCGAGGccGCg -3'
miRNA:   3'- uugGGUGGCGGAGaCC------UCCGUUCU--CG- -5'
29932 5' -58.8 NC_006273.1 + 150022 0.66 0.863325
Target:  5'- uGCUCACgGCUUgCgUGGAGGUcuGGGCg -3'
miRNA:   3'- uUGGGUGgCGGA-G-ACCUCCGuuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 133281 0.69 0.725773
Target:  5'- gAugCCGCCGUCUC-GGGcGCAAGcGGCg -3'
miRNA:   3'- -UugGGUGGCGGAGaCCUcCGUUC-UCG- -5'
29932 5' -58.8 NC_006273.1 + 96659 0.69 0.716188
Target:  5'- cGCCCGaucCCGCCUCcGGuAGGCGAuuuGCa -3'
miRNA:   3'- uUGGGU---GGCGGAGaCC-UCCGUUcu-CG- -5'
29932 5' -58.8 NC_006273.1 + 179077 0.69 0.716188
Target:  5'- cAACCCuCUGCUUUUGcGGGCAAGcGCg -3'
miRNA:   3'- -UUGGGuGGCGGAGACcUCCGUUCuCG- -5'
29932 5' -58.8 NC_006273.1 + 147518 0.73 0.456082
Target:  5'- cGGCCCGCuCG-CUCgGGAGGCGaugGGGGCg -3'
miRNA:   3'- -UUGGGUG-GCgGAGaCCUCCGU---UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 174278 0.73 0.492457
Target:  5'- cGACCaugaGCCgCUGGAGGCAugGGAGCa -3'
miRNA:   3'- -UUGGguggCGGaGACCUCCGU--UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 94357 0.72 0.520591
Target:  5'- -uCCCACCGCC-CUGGA-GCAccauccGGGGCc -3'
miRNA:   3'- uuGGGUGGCGGaGACCUcCGU------UCUCG- -5'
29932 5' -58.8 NC_006273.1 + 104239 0.72 0.549333
Target:  5'- cACCuCGCCGCCguguucGGGCGAGAGCa -3'
miRNA:   3'- uUGG-GUGGCGGagacc-UCCGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 142803 0.7 0.617972
Target:  5'- --gCCGCCGUCgCUGGuGGGCAcGGGCg -3'
miRNA:   3'- uugGGUGGCGGaGACC-UCCGUuCUCG- -5'
29932 5' -58.8 NC_006273.1 + 153805 0.69 0.687062
Target:  5'- --gCCGCCGCCugcgaggaccUCUcGGAGcuguGCGAGAGCa -3'
miRNA:   3'- uugGGUGGCGG----------AGA-CCUC----CGUUCUCG- -5'
29932 5' -58.8 NC_006273.1 + 73729 0.69 0.687062
Target:  5'- -cCCCGCCGCCaugGGuGGCGGcGGCg -3'
miRNA:   3'- uuGGGUGGCGGagaCCuCCGUUcUCG- -5'
29932 5' -58.8 NC_006273.1 + 197387 0.69 0.706536
Target:  5'- cACCCGCgCGCCgcgCUGuGGGcGCGcGAGCc -3'
miRNA:   3'- uUGGGUG-GCGGa--GAC-CUC-CGUuCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.