miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 3' -57.2 NC_006273.1 + 228732 0.66 0.93552
Target:  5'- aGUGCGGU-CGGUGUCUcaucggugagacgagGCCGCCGCCc -3'
miRNA:   3'- -CGUGUCGuGCUACGGG---------------UGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 88525 0.66 0.933595
Target:  5'- gGCACGGUcaccaaggaACGAUGCUCAaaaaCGCUccguACCAa -3'
miRNA:   3'- -CGUGUCG---------UGCUACGGGUg---GUGG----UGGU- -5'
29933 3' -57.2 NC_006273.1 + 105165 0.66 0.933595
Target:  5'- uGCGCGGCGcCGcgGCCuCGCC-CagguaGCCGg -3'
miRNA:   3'- -CGUGUCGU-GCuaCGG-GUGGuGg----UGGU- -5'
29933 3' -57.2 NC_006273.1 + 8918 0.66 0.933595
Target:  5'- aGCACAuccaaACG-UGagCCACCACCACCc -3'
miRNA:   3'- -CGUGUcg---UGCuACg-GGUGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 39492 0.66 0.933595
Target:  5'- uGCugGGCACcGUGgCCACCuccuucugUCACCGc -3'
miRNA:   3'- -CGugUCGUGcUACgGGUGGu-------GGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 37040 0.66 0.933595
Target:  5'- aGUGCGGCGa-AUGCUCGCCcCCgACCAc -3'
miRNA:   3'- -CGUGUCGUgcUACGGGUGGuGG-UGGU- -5'
29933 3' -57.2 NC_006273.1 + 119679 0.66 0.933595
Target:  5'- gGCAcCGGCAaGAUGCgCAUUACCcCCGa -3'
miRNA:   3'- -CGU-GUCGUgCUACGgGUGGUGGuGGU- -5'
29933 3' -57.2 NC_006273.1 + 72992 0.66 0.933595
Target:  5'- uGCugAcCGCcgcuCCCGCCGCCGCCAc -3'
miRNA:   3'- -CGugUcGUGcuacGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 209347 0.66 0.933595
Target:  5'- uGCGCAGgguCAUGAUuCUCAgCACCAUCAg -3'
miRNA:   3'- -CGUGUC---GUGCUAcGGGUgGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 196492 0.66 0.933595
Target:  5'- gGCACGGCGCGGgcgagguggUGCggCugUACCGCUg -3'
miRNA:   3'- -CGUGUCGUGCU---------ACGg-GugGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 127985 0.66 0.933595
Target:  5'- -uGCGGUAUGcgGCgCGCCgcACCGCCc -3'
miRNA:   3'- cgUGUCGUGCuaCGgGUGG--UGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 1599 0.66 0.933595
Target:  5'- gGCACGGCGCGGgcgagguggUGCggCugUACCGCUg -3'
miRNA:   3'- -CGUGUCGUGCU---------ACGg-GugGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 40552 0.66 0.933595
Target:  5'- ---gAGgGCGGUcGaCCUACCACCGCCu -3'
miRNA:   3'- cgugUCgUGCUA-C-GGGUGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 142819 0.66 0.933595
Target:  5'- gGCACGGgcgugcacCGCGGucUGCUCACgGCCACgGg -3'
miRNA:   3'- -CGUGUC--------GUGCU--ACGGGUGgUGGUGgU- -5'
29933 3' -57.2 NC_006273.1 + 189790 0.66 0.933595
Target:  5'- uGUAgAGC-CGcgGCCaugGCCGCCugCAc -3'
miRNA:   3'- -CGUgUCGuGCuaCGGg--UGGUGGugGU- -5'
29933 3' -57.2 NC_006273.1 + 59983 0.66 0.933595
Target:  5'- cCGCGaCACGGUGUCCAUCuCgCGCCAc -3'
miRNA:   3'- cGUGUcGUGCUACGGGUGGuG-GUGGU- -5'
29933 3' -57.2 NC_006273.1 + 41566 0.66 0.933595
Target:  5'- cCACAGCAUGc-GCUguCGCCGCCgcGCCAu -3'
miRNA:   3'- cGUGUCGUGCuaCGG--GUGGUGG--UGGU- -5'
29933 3' -57.2 NC_006273.1 + 56719 0.66 0.928626
Target:  5'- cCGCGGU-CGugcuucuUGCcgCCACCGCCGCCAc -3'
miRNA:   3'- cGUGUCGuGCu------ACG--GGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 212577 0.66 0.928626
Target:  5'- aGCACGGC-CGAaGCggCgGUCACCACCAg -3'
miRNA:   3'- -CGUGUCGuGCUaCG--GgUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 152970 0.66 0.928626
Target:  5'- uGCGCAGCACGcacgGgUCGCgCAgCACCu -3'
miRNA:   3'- -CGUGUCGUGCua--CgGGUG-GUgGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.