miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 3' -57.2 NC_006273.1 + 120729 0.66 0.906505
Target:  5'- gGCACcagguugcgGGcCAgGAUGCCgGCCGCCagggcgGCCAg -3'
miRNA:   3'- -CGUG---------UC-GUgCUACGGgUGGUGG------UGGU- -5'
29933 3' -57.2 NC_006273.1 + 41902 0.66 0.918013
Target:  5'- cGCugAaaauGCugGAacaCCGCCACCACUAg -3'
miRNA:   3'- -CGugU----CGugCUacgGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 43837 0.66 0.921829
Target:  5'- uGCACAGUAgGcuuUGCCaccguagcccugauCGCCGCCgACCGa -3'
miRNA:   3'- -CGUGUCGUgCu--ACGG--------------GUGGUGG-UGGU- -5'
29933 3' -57.2 NC_006273.1 + 19125 0.66 0.918013
Target:  5'- cCAC--CACGAgaacaaCCACCACCGCCAa -3'
miRNA:   3'- cGUGucGUGCUacg---GGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 39087 0.66 0.91237
Target:  5'- uGCACacacaacuGGuCAUGGUGCCCuucguGCCGCaCGCCu -3'
miRNA:   3'- -CGUG--------UC-GUGCUACGGG-----UGGUG-GUGGu -5'
29933 3' -57.2 NC_006273.1 + 131563 0.66 0.906505
Target:  5'- aGCGCAGCAaGGUGU--ACUggACCACCAa -3'
miRNA:   3'- -CGUGUCGUgCUACGggUGG--UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 61271 0.66 0.91237
Target:  5'- -uGCAGCGCGgcGCgCGCgGCCgagGCCGu -3'
miRNA:   3'- cgUGUCGUGCuaCGgGUGgUGG---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 61584 0.66 0.918013
Target:  5'- cGCGCGGC-CGuuUGgCCACCGCgCGCg- -3'
miRNA:   3'- -CGUGUCGuGCu-ACgGGUGGUG-GUGgu -5'
29933 3' -57.2 NC_006273.1 + 100524 0.66 0.906505
Target:  5'- aGCugAcGCAUGccGCCCACCGUCuCCAg -3'
miRNA:   3'- -CGugU-CGUGCuaCGGGUGGUGGuGGU- -5'
29933 3' -57.2 NC_006273.1 + 204709 0.66 0.906505
Target:  5'- cGC-CGGCAcCGcgGCCgGCCGCaggaaGCCGc -3'
miRNA:   3'- -CGuGUCGU-GCuaCGGgUGGUGg----UGGU- -5'
29933 3' -57.2 NC_006273.1 + 122250 0.66 0.918013
Target:  5'- -aGCGGCGC---GCCCucugcgGCCGCCGCCu -3'
miRNA:   3'- cgUGUCGUGcuaCGGG------UGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 227484 0.66 0.91237
Target:  5'- aCGCGGaUACcugacaGUCCGCCGCCACCGu -3'
miRNA:   3'- cGUGUC-GUGcua---CGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 35879 0.66 0.918013
Target:  5'- cGCcCAGCAUGAUGCCgugcaGCgGCgGCCn -3'
miRNA:   3'- -CGuGUCGUGCUACGGg----UGgUGgUGGu -5'
29933 3' -57.2 NC_006273.1 + 35816 0.66 0.914654
Target:  5'- gGCGCAGgCACGAgaagcGCCgguaggucuugugauCGCgCACCACCc -3'
miRNA:   3'- -CGUGUC-GUGCUa----CGG---------------GUG-GUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 163446 0.66 0.918013
Target:  5'- -aGCAGuCGC-AUGUCCGCCACucguCACCAc -3'
miRNA:   3'- cgUGUC-GUGcUACGGGUGGUG----GUGGU- -5'
29933 3' -57.2 NC_006273.1 + 79747 0.66 0.906505
Target:  5'- gGCGCccuGGUACGAaaccGCCgCAgUACCACCGg -3'
miRNA:   3'- -CGUG---UCGUGCUa---CGG-GUgGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 203350 0.66 0.918013
Target:  5'- gGC-CAGCACGuauCCCaacagcagcACCAUCGCCAu -3'
miRNA:   3'- -CGuGUCGUGCuacGGG---------UGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 65837 0.66 0.906505
Target:  5'- gGCGCAGCagGCGGUacgcGCCUAUCuggGCCAuCCAa -3'
miRNA:   3'- -CGUGUCG--UGCUA----CGGGUGG---UGGU-GGU- -5'
29933 3' -57.2 NC_006273.1 + 105165 0.66 0.933595
Target:  5'- uGCGCGGCGcCGcgGCCuCGCC-CagguaGCCGg -3'
miRNA:   3'- -CGUGUCGU-GCuaCGG-GUGGuGg----UGGU- -5'
29933 3' -57.2 NC_006273.1 + 194340 0.66 0.906505
Target:  5'- --cCGGCACGcaacaGCCCGCCAUC-CCGc -3'
miRNA:   3'- cguGUCGUGCua---CGGGUGGUGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.