miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 3' -57.2 NC_006273.1 + 61174 1.1 0.002791
Target:  5'- gGCACAGCACGAUGCCCACCACCACCAg -3'
miRNA:   3'- -CGUGUCGUGCUACGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 32818 0.83 0.175451
Target:  5'- aGCACAGCACGcUGCCguCgGCCGCCAc -3'
miRNA:   3'- -CGUGUCGUGCuACGGguGgUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 156040 0.82 0.202925
Target:  5'- -aACGGCAUGAugccgugucUGCCCAUCGCCGCCAg -3'
miRNA:   3'- cgUGUCGUGCU---------ACGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 233148 0.81 0.228602
Target:  5'- cGCGCGGCACGGUcCCCGaCGCCGCCGg -3'
miRNA:   3'- -CGUGUCGUGCUAcGGGUgGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 38255 0.81 0.228602
Target:  5'- cGCGCGGCACGGUcCCCGaCGCCGCCGg -3'
miRNA:   3'- -CGUGUCGUGCUAcGGGUgGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 50325 0.79 0.294745
Target:  5'- gGCugAGCaacGCGAugcUGCCCGCCGCCACa- -3'
miRNA:   3'- -CGugUCG---UGCU---ACGGGUGGUGGUGgu -5'
29933 3' -57.2 NC_006273.1 + 94660 0.78 0.315197
Target:  5'- cGCACaAGCGCcg-GcCCCGCCGCCGCCAc -3'
miRNA:   3'- -CGUG-UCGUGcuaC-GGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 164603 0.77 0.367011
Target:  5'- uCGCAGUACGGguccugGCCCACgAUCACCAc -3'
miRNA:   3'- cGUGUCGUGCUa-----CGGGUGgUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 2388 0.76 0.407452
Target:  5'- gGCGCuggGGCGCGAgucggcGCCCGCCGCCgagGCCGc -3'
miRNA:   3'- -CGUG---UCGUGCUa-----CGGGUGGUGG---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 197281 0.76 0.407452
Target:  5'- gGCGCuggGGCGCGAgucggcGCCCGCCGCCgagGCCGc -3'
miRNA:   3'- -CGUG---UCGUGCUa-----CGGGUGGUGG---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 105114 0.76 0.415869
Target:  5'- gGCGCGGCuGCGAcgguUGCaCCACCgacGCCACCGg -3'
miRNA:   3'- -CGUGUCG-UGCU----ACG-GGUGG---UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 197642 0.76 0.424391
Target:  5'- aCGCuGCaACGAUGCCC-CCACCGCuCAg -3'
miRNA:   3'- cGUGuCG-UGCUACGGGuGGUGGUG-GU- -5'
29933 3' -57.2 NC_006273.1 + 165074 0.76 0.424391
Target:  5'- cGCACGGCGCGGUugguacgcgugGCUUcguugcguaugGCCACCACCAc -3'
miRNA:   3'- -CGUGUCGUGCUA-----------CGGG-----------UGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 74572 0.76 0.433018
Target:  5'- cCGCAGCAUGccGCCCcaauCCGCCGCCc -3'
miRNA:   3'- cGUGUCGUGCuaCGGGu---GGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 46415 0.76 0.441745
Target:  5'- cCugAGCACGccGCCCACCaagaaaacACCGCCGc -3'
miRNA:   3'- cGugUCGUGCuaCGGGUGG--------UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 58651 0.75 0.450571
Target:  5'- aGCGCguccaAGCGCGcguUGCCCcaaACCACCGCCu -3'
miRNA:   3'- -CGUG-----UCGUGCu--ACGGG---UGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 133076 0.75 0.474873
Target:  5'- cCGCcGCACGAccUGCCCgcguugccccugucACCGCCGCCAc -3'
miRNA:   3'- cGUGuCGUGCU--ACGGG--------------UGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 79040 0.75 0.477613
Target:  5'- uGCGCcaGGCugG--GCCCACgCGCCACCAg -3'
miRNA:   3'- -CGUG--UCGugCuaCGGGUG-GUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 2559 0.75 0.486805
Target:  5'- cCGCGGCGaggcugaGGUGCUCACCcuaGCCACCAa -3'
miRNA:   3'- cGUGUCGUg------CUACGGGUGG---UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 68106 0.74 0.505433
Target:  5'- uCGCcGCAaacccCGucAUGCCCGCCACCGCCAc -3'
miRNA:   3'- cGUGuCGU-----GC--UACGGGUGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.