miRNA display CGI


Results 21 - 40 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 3' -57.2 NC_006273.1 + 117672 0.66 0.928626
Target:  5'- -gACGGCGCGGgcucguaacGCCgACC-CCACCc -3'
miRNA:   3'- cgUGUCGUGCUa--------CGGgUGGuGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 56719 0.66 0.928626
Target:  5'- cCGCGGU-CGugcuucuUGCcgCCACCGCCGCCAc -3'
miRNA:   3'- cGUGUCGuGCu------ACG--GGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 142551 0.66 0.928626
Target:  5'- uGCACugauGGuCACGugaccaggaaaaGUGCUCACCGCCucGCCGg -3'
miRNA:   3'- -CGUG----UC-GUGC------------UACGGGUGGUGG--UGGU- -5'
29933 3' -57.2 NC_006273.1 + 92235 0.66 0.928626
Target:  5'- -uGCGGCGCGccGUGCCCgucuccugaaagACgGCCACaCAg -3'
miRNA:   3'- cgUGUCGUGC--UACGGG------------UGgUGGUG-GU- -5'
29933 3' -57.2 NC_006273.1 + 212577 0.66 0.928626
Target:  5'- aGCACGGC-CGAaGCggCgGUCACCACCAg -3'
miRNA:   3'- -CGUGUCGuGCUaCG--GgUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 137213 0.66 0.928626
Target:  5'- cGC-CAGCGCGAgcGCUCGgCGCCcaaACCGc -3'
miRNA:   3'- -CGuGUCGUGCUa-CGGGUgGUGG---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 152970 0.66 0.928626
Target:  5'- uGCGCAGCACGcacgGgUCGCgCAgCACCu -3'
miRNA:   3'- -CGUGUCGUGCua--CgGGUG-GUgGUGGu -5'
29933 3' -57.2 NC_006273.1 + 123127 0.66 0.927605
Target:  5'- cGCACccgguccaugAGCACGuccucgcgccaGCCCccgccgcgcauuGCCACCGCCGc -3'
miRNA:   3'- -CGUG----------UCGUGCua---------CGGG------------UGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 180411 0.66 0.925536
Target:  5'- cCAUGGguCuGUGCCCgacgacgguuuccacGCCACCGCCGc -3'
miRNA:   3'- cGUGUCguGcUACGGG---------------UGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 91552 0.66 0.923431
Target:  5'- aGCACGucauguuugacGCACGAcgucUGagacaCCACCgugGCCACCAc -3'
miRNA:   3'- -CGUGU-----------CGUGCU----ACg----GGUGG---UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 114275 0.66 0.923431
Target:  5'- aGUACAGCGagcacCCCACCuuCACCAg -3'
miRNA:   3'- -CGUGUCGUgcuacGGGUGGugGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 18884 0.66 0.923431
Target:  5'- gGCACGGCGCacuggGCaCCAUCACaCGCUc -3'
miRNA:   3'- -CGUGUCGUGcua--CG-GGUGGUG-GUGGu -5'
29933 3' -57.2 NC_006273.1 + 198887 0.66 0.923431
Target:  5'- uGUACAcGCGCGA-GCCCGUCauGCCGCUg -3'
miRNA:   3'- -CGUGU-CGUGCUaCGGGUGG--UGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 73183 0.66 0.923431
Target:  5'- -gGCGGUagacGCGgcGCCgcaACCACCGCCu -3'
miRNA:   3'- cgUGUCG----UGCuaCGGg--UGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 49969 0.66 0.923431
Target:  5'- uGCGCGGUGCug-GUCCACCACgucgGCCGc -3'
miRNA:   3'- -CGUGUCGUGcuaCGGGUGGUGg---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 66033 0.66 0.923431
Target:  5'- aGCACGGCcCGgcGCUCAUCGCCu--- -3'
miRNA:   3'- -CGUGUCGuGCuaCGGGUGGUGGuggu -5'
29933 3' -57.2 NC_006273.1 + 43837 0.66 0.921829
Target:  5'- uGCACAGUAgGcuuUGCCaccguagcccugauCGCCGCCgACCGa -3'
miRNA:   3'- -CGUGUCGUgCu--ACGG--------------GUGGUGG-UGGU- -5'
29933 3' -57.2 NC_006273.1 + 35879 0.66 0.918013
Target:  5'- cGCcCAGCAUGAUGCCgugcaGCgGCgGCCn -3'
miRNA:   3'- -CGuGUCGUGCUACGGg----UGgUGgUGGu -5'
29933 3' -57.2 NC_006273.1 + 122250 0.66 0.918013
Target:  5'- -aGCGGCGC---GCCCucugcgGCCGCCGCCu -3'
miRNA:   3'- cgUGUCGUGcuaCGGG------UGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 61584 0.66 0.918013
Target:  5'- cGCGCGGC-CGuuUGgCCACCGCgCGCg- -3'
miRNA:   3'- -CGUGUCGuGCu-ACgGGUGGUG-GUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.