miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 3' -57.2 NC_006273.1 + 314 0.68 0.828206
Target:  5'- aCGCAGaCACG--GCCCGCCAacaCACCc -3'
miRNA:   3'- cGUGUC-GUGCuaCGGGUGGUg--GUGGu -5'
29933 3' -57.2 NC_006273.1 + 1268 0.67 0.887595
Target:  5'- uCGCAGCGCGAcgcggGCaCGCUGCUGCCGc -3'
miRNA:   3'- cGUGUCGUGCUa----CGgGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 1599 0.66 0.933595
Target:  5'- gGCACGGCGCGGgcgagguggUGCggCugUACCGCUg -3'
miRNA:   3'- -CGUGUCGUGCU---------ACGg-GugGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 1831 0.67 0.888256
Target:  5'- gGCGCAGUACGAgccguucgcgucggcGCCgCACC-CCGCg- -3'
miRNA:   3'- -CGUGUCGUGCUa--------------CGG-GUGGuGGUGgu -5'
29933 3' -57.2 NC_006273.1 + 2388 0.76 0.407452
Target:  5'- gGCGCuggGGCGCGAgucggcGCCCGCCGCCgagGCCGc -3'
miRNA:   3'- -CGUG---UCGUGCUa-----CGGGUGGUGG---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 2559 0.75 0.486805
Target:  5'- cCGCGGCGaggcugaGGUGCUCACCcuaGCCACCAa -3'
miRNA:   3'- cGUGUCGUg------CUACGGGUGG---UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 4222 0.69 0.794296
Target:  5'- cCGCAGCuCGGa-CCCACCGCC-CCAa -3'
miRNA:   3'- cGUGUCGuGCUacGGGUGGUGGuGGU- -5'
29933 3' -57.2 NC_006273.1 + 5821 0.67 0.880863
Target:  5'- cCACAG-ACGGUGUaaCCGCCgcaucugucGCCGCCAa -3'
miRNA:   3'- cGUGUCgUGCUACG--GGUGG---------UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 7061 0.69 0.802999
Target:  5'- cGCcagaAGCACGAUGCCgGuCCACCAg-- -3'
miRNA:   3'- -CGug--UCGUGCUACGGgU-GGUGGUggu -5'
29933 3' -57.2 NC_006273.1 + 8503 0.68 0.85944
Target:  5'- cGUAC-GCACGAUuaCCcCCGCCcACCAu -3'
miRNA:   3'- -CGUGuCGUGCUAcgGGuGGUGG-UGGU- -5'
29933 3' -57.2 NC_006273.1 + 8918 0.66 0.933595
Target:  5'- aGCACAuccaaACG-UGagCCACCACCACCc -3'
miRNA:   3'- -CGUGUcg---UGCuACg-GGUGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 12401 0.66 0.91237
Target:  5'- cUACGGCGagcaGAUGCgCaCGCCGCUGCUAa -3'
miRNA:   3'- cGUGUCGUg---CUACG-G-GUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 13560 0.69 0.822452
Target:  5'- aUACGGCGCaacgccgGGUGCUCACCcgccgggcggcccggGCCGCCGu -3'
miRNA:   3'- cGUGUCGUG-------CUACGGGUGG---------------UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 15239 0.73 0.602294
Target:  5'- cGUGCGGCGCGuUGCCaaCACCAUCACgGa -3'
miRNA:   3'- -CGUGUCGUGCuACGG--GUGGUGGUGgU- -5'
29933 3' -57.2 NC_006273.1 + 16135 0.66 0.91237
Target:  5'- -gGCAGCACcAUGCCggagCugCGCgACCAa -3'
miRNA:   3'- cgUGUCGUGcUACGG----GugGUGgUGGU- -5'
29933 3' -57.2 NC_006273.1 + 17175 0.66 0.906505
Target:  5'- cGCGCcauGC-CGGUcGUCCGCCgucgGCCGCCGc -3'
miRNA:   3'- -CGUGu--CGuGCUA-CGGGUGG----UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 17604 0.73 0.592416
Target:  5'- aUACAGCGguAUGCUCGCCGCCGCUu -3'
miRNA:   3'- cGUGUCGUgcUACGGGUGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 17687 0.72 0.651863
Target:  5'- -gGCGGCGCGu--CCCACCcccuggGCCACCAg -3'
miRNA:   3'- cgUGUCGUGCuacGGGUGG------UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 18338 0.67 0.894114
Target:  5'- gGCACccacaaACGccGUUCGCCACCACCGa -3'
miRNA:   3'- -CGUGucg---UGCuaCGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 18884 0.66 0.923431
Target:  5'- gGCACGGCGCacuggGCaCCAUCACaCGCUc -3'
miRNA:   3'- -CGUGUCGUGcua--CG-GGUGGUG-GUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.