miRNA display CGI


Results 1 - 20 of 307 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 3' -57.2 NC_006273.1 + 229716 0.72 0.632029
Target:  5'- cGUGCgAGCcuucucGCGG-GCCUACCACCACCGc -3'
miRNA:   3'- -CGUG-UCG------UGCUaCGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 191938 0.73 0.562967
Target:  5'- uCGCGGCAUGAcggcGCCCAagugugUCACCACCAc -3'
miRNA:   3'- cGUGUCGUGCUa---CGGGU------GGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 211940 0.73 0.572746
Target:  5'- aGCAagaaGGUGCaGGUGCCCugCACgGCCAc -3'
miRNA:   3'- -CGUg---UCGUG-CUACGGGugGUGgUGGU- -5'
29933 3' -57.2 NC_006273.1 + 35909 0.73 0.572746
Target:  5'- aGCACAGCGgGA-GCCaACgACCGCCGu -3'
miRNA:   3'- -CGUGUCGUgCUaCGGgUGgUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 34401 0.73 0.572746
Target:  5'- uGCACAcCACGuauUGCCCcgugGCCACgGCCAg -3'
miRNA:   3'- -CGUGUcGUGCu--ACGGG----UGGUGgUGGU- -5'
29933 3' -57.2 NC_006273.1 + 17604 0.73 0.592416
Target:  5'- aUACAGCGguAUGCUCGCCGCCGCUu -3'
miRNA:   3'- cGUGUCGUgcUACGGGUGGUGGUGGu -5'
29933 3' -57.2 NC_006273.1 + 227362 0.73 0.602294
Target:  5'- gGCGCAuGUugGGucUG-CCGCCGCCACCGu -3'
miRNA:   3'- -CGUGU-CGugCU--ACgGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 233361 0.72 0.612194
Target:  5'- cGCACGGCGCGuc-CCCGCCgGCgGCCu -3'
miRNA:   3'- -CGUGUCGUGCuacGGGUGG-UGgUGGu -5'
29933 3' -57.2 NC_006273.1 + 147689 0.72 0.622108
Target:  5'- cGCuCAGC-CGccGCUgACCACCGCCAc -3'
miRNA:   3'- -CGuGUCGuGCuaCGGgUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 114616 0.73 0.562967
Target:  5'- --gUAGC-CGcuGUGCCCACCGCCGCUAc -3'
miRNA:   3'- cguGUCGuGC--UACGGGUGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 77372 0.73 0.550324
Target:  5'- uGCACuucGUGCGAggacaaccgcauccUGCCCACCGCCuCCGa -3'
miRNA:   3'- -CGUGu--CGUGCU--------------ACGGGUGGUGGuGGU- -5'
29933 3' -57.2 NC_006273.1 + 79040 0.75 0.477613
Target:  5'- uGCGCcaGGCugG--GCCCACgCGCCACCAg -3'
miRNA:   3'- -CGUG--UCGugCuaCGGGUG-GUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 233148 0.81 0.228602
Target:  5'- cGCGCGGCACGGUcCCCGaCGCCGCCGg -3'
miRNA:   3'- -CGUGUCGUGCUAcGGGUgGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 50325 0.79 0.294745
Target:  5'- gGCugAGCaacGCGAugcUGCCCGCCGCCACa- -3'
miRNA:   3'- -CGugUCG---UGCU---ACGGGUGGUGGUGgu -5'
29933 3' -57.2 NC_006273.1 + 164603 0.77 0.367011
Target:  5'- uCGCAGUACGGguccugGCCCACgAUCACCAc -3'
miRNA:   3'- cGUGUCGUGCUa-----CGGGUGgUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 197281 0.76 0.407452
Target:  5'- gGCGCuggGGCGCGAgucggcGCCCGCCGCCgagGCCGc -3'
miRNA:   3'- -CGUG---UCGUGCUa-----CGGGUGGUGG---UGGU- -5'
29933 3' -57.2 NC_006273.1 + 105114 0.76 0.415869
Target:  5'- gGCGCGGCuGCGAcgguUGCaCCACCgacGCCACCGg -3'
miRNA:   3'- -CGUGUCG-UGCU----ACG-GGUGG---UGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 197642 0.76 0.424391
Target:  5'- aCGCuGCaACGAUGCCC-CCACCGCuCAg -3'
miRNA:   3'- cGUGuCG-UGCUACGGGuGGUGGUG-GU- -5'
29933 3' -57.2 NC_006273.1 + 165074 0.76 0.424391
Target:  5'- cGCACGGCGCGGUugguacgcgugGCUUcguugcguaugGCCACCACCAc -3'
miRNA:   3'- -CGUGUCGUGCUA-----------CGGG-----------UGGUGGUGGU- -5'
29933 3' -57.2 NC_006273.1 + 58651 0.75 0.450571
Target:  5'- aGCGCguccaAGCGCGcguUGCCCcaaACCACCGCCu -3'
miRNA:   3'- -CGUG-----UCGUGCu--ACGGG---UGGUGGUGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.