miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29933 5' -56 NC_006273.1 + 220465 0.66 0.96532
Target:  5'- cGGCCGUGGCGuacgagcccucAGGcGU-UGUGUCa- -3'
miRNA:   3'- -CCGGCACCGCca---------UCC-CAuACACAGac -5'
29933 5' -56 NC_006273.1 + 234845 0.66 0.962741
Target:  5'- -aCCGgcGGCGGUcGGG-GUGUGUCg- -3'
miRNA:   3'- ccGGCa-CCGCCAuCCCaUACACAGac -5'
29933 5' -56 NC_006273.1 + 234007 0.66 0.962741
Target:  5'- cGG-CGUGGUGu--GGGUGcuguuUGUGUCUGu -3'
miRNA:   3'- -CCgGCACCGCcauCCCAU-----ACACAGAC- -5'
29933 5' -56 NC_006273.1 + 194907 0.66 0.962741
Target:  5'- -aCCGgcGGCGGUcGGG-GUGUGUCg- -3'
miRNA:   3'- ccGGCa-CCGCCAuCCCaUACACAGac -5'
29933 5' -56 NC_006273.1 + 114095 0.66 0.962741
Target:  5'- gGGCgGcGGUGGU-GGGUAUGUccccuUCUGu -3'
miRNA:   3'- -CCGgCaCCGCCAuCCCAUACAc----AGAC- -5'
29933 5' -56 NC_006273.1 + 14 0.66 0.962741
Target:  5'- -aCCGgcGGCGGUcGGG-GUGUGUCg- -3'
miRNA:   3'- ccGGCa-CCGCCAuCCCaUACACAGac -5'
29933 5' -56 NC_006273.1 + 233964 0.66 0.959335
Target:  5'- uGCUGUGGUGuaAGGGUaacGUGUGUUg- -3'
miRNA:   3'- cCGGCACCGCcaUCCCA---UACACAGac -5'
29933 5' -56 NC_006273.1 + 140698 0.66 0.95572
Target:  5'- gGGUgGUGGUGGUGGuGGUGgagugGUGg--- -3'
miRNA:   3'- -CCGgCACCGCCAUC-CCAUa----CACagac -5'
29933 5' -56 NC_006273.1 + 124078 0.66 0.947851
Target:  5'- uGGUCGUGGUGGUAGuGGUGgcgaggaaaGUGa--- -3'
miRNA:   3'- -CCGGCACCGCCAUC-CCAUa--------CACagac -5'
29933 5' -56 NC_006273.1 + 110765 0.66 0.947851
Target:  5'- uGGUuaaagUGUGGCGGUguaguccugaGGuGGUAUGUGauUCUGu -3'
miRNA:   3'- -CCG-----GCACCGCCA----------UC-CCAUACAC--AGAC- -5'
29933 5' -56 NC_006273.1 + 194931 0.67 0.94359
Target:  5'- gGGgCGcGGCGGgguGGGUGUGUGc--- -3'
miRNA:   3'- -CCgGCaCCGCCau-CCCAUACACagac -5'
29933 5' -56 NC_006273.1 + 139465 0.67 0.94359
Target:  5'- aGGCCGUGGagaugcaggaGGUGGGGUGgcucuUGcgcuUCUGc -3'
miRNA:   3'- -CCGGCACCg---------CCAUCCCAUac---AC----AGAC- -5'
29933 5' -56 NC_006273.1 + 234869 0.67 0.94359
Target:  5'- gGGgCGcGGCGGgguGGGUGUGUGc--- -3'
miRNA:   3'- -CCgGCaCCGCCau-CCCAUACACagac -5'
29933 5' -56 NC_006273.1 + 38 0.67 0.94359
Target:  5'- gGGgCGcGGCGGgguGGGUGUGUGc--- -3'
miRNA:   3'- -CCgGCaCCGCCau-CCCAUACACagac -5'
29933 5' -56 NC_006273.1 + 234894 0.7 0.829659
Target:  5'- cGGgUGUGGCGGgugugucAGGGUgugccgcggGUGUGUCg- -3'
miRNA:   3'- -CCgGCACCGCCa------UCCCA---------UACACAGac -5'
29933 5' -56 NC_006273.1 + 63 0.7 0.829659
Target:  5'- cGGgUGUGGCGGgugugucAGGGUgugccgcggGUGUGUCg- -3'
miRNA:   3'- -CCgGCACCGCCa------UCCCA---------UACACAGac -5'
29933 5' -56 NC_006273.1 + 194956 0.7 0.829659
Target:  5'- cGGgUGUGGCGGgugugucAGGGUgugccgcggGUGUGUCg- -3'
miRNA:   3'- -CCgGCACCGCCa------UCCCA---------UACACAGac -5'
29933 5' -56 NC_006273.1 + 182893 0.7 0.829659
Target:  5'- cGCCgGUGGCGuUAGGGccGUGUGUgCUGc -3'
miRNA:   3'- cCGG-CACCGCcAUCCCa-UACACA-GAC- -5'
29933 5' -56 NC_006273.1 + 145629 0.7 0.804554
Target:  5'- cGGUCGUGGUGGUGGGG-GUGg--Cg- -3'
miRNA:   3'- -CCGGCACCGCCAUCCCaUACacaGac -5'
29933 5' -56 NC_006273.1 + 37243 0.74 0.624031
Target:  5'- gGGCgGUGGCGGUcuuGGcGGUcgG-GUCUGu -3'
miRNA:   3'- -CCGgCACCGCCA---UC-CCAuaCaCAGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.