Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29934 | 3' | -52.7 | NC_006273.1 | + | 6484 | 0.66 | 0.9924 |
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Target: 5'- uGUGCGgGcUCCGGcugcucGCAguUGGGCUCcUCg -3' miRNA: 3'- -CAUGCaCaAGGCC------UGU--ACCCGAGaAG- -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 121670 | 0.66 | 0.9924 |
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Target: 5'- -gACGUGUagUaGACGUcGGGCUCUUUc -3' miRNA: 3'- caUGCACAagGcCUGUA-CCCGAGAAG- -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 101124 | 0.66 | 0.990107 |
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Target: 5'- uUACGUGUaUCUGGACcc-GGC-CUUCa -3' miRNA: 3'- cAUGCACA-AGGCCUGuacCCGaGAAG- -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 13874 | 0.68 | 0.975182 |
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Target: 5'- -aGCGgucUGUUCagguGGAUGaGGGCUCUUCa -3' miRNA: 3'- caUGC---ACAAGg---CCUGUaCCCGAGAAG- -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 159263 | 0.68 | 0.969696 |
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Target: 5'- uGUGCGUaaGUUCCGugaguGGCGUGGuGCUCa-- -3' miRNA: 3'- -CAUGCA--CAAGGC-----CUGUACC-CGAGaag -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 156716 | 0.69 | 0.963393 |
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Target: 5'- uGUGCGUGUUgaGGACcUGGuGCUUUcgUCg -3' miRNA: 3'- -CAUGCACAAggCCUGuACC-CGAGA--AG- -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 20317 | 0.69 | 0.963393 |
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Target: 5'- -aACgGUGUUUCGGACGcGGGCgUCUg- -3' miRNA: 3'- caUG-CACAAGGCCUGUaCCCG-AGAag -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 120473 | 0.69 | 0.956229 |
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Target: 5'- uUGCGUG-UCUgaguGGACGUGGGUUUUUa -3' miRNA: 3'- cAUGCACaAGG----CCUGUACCCGAGAAg -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 52573 | 0.7 | 0.926075 |
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Target: 5'- gGUACGUGUUCCcagcagGGACcgugugcggucucuUGGGCUCg-- -3' miRNA: 3'- -CAUGCACAAGG------CCUGu-------------ACCCGAGaag -5' |
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| 29934 | 3' | -52.7 | NC_006273.1 | + | 61044 | 1.09 | 0.008396 |
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Target: 5'- gGUACGUGUUCCGGACAUGGGCUCUUCu -3' miRNA: 3'- -CAUGCACAAGGCCUGUACCCGAGAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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