miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29934 5' -59.6 NC_006273.1 + 46317 0.66 0.867298
Target:  5'- gGGCGcaagaAGCggCCGCcuacgccgccgGUCCGGGCCCc -3'
miRNA:   3'- gCCGCc----UCGaaGGUG-----------UAGGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 95642 0.66 0.865878
Target:  5'- aGGCGGAGgaagauuCGUCUGAGCCUg -3'
miRNA:   3'- gCCGCCUCgaaggu-GUAGGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 61234 0.66 0.86012
Target:  5'- gCGGCGGuGCag-CAgAUgCGGGCCCa -3'
miRNA:   3'- -GCCGCCuCGaagGUgUAgGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 155642 0.66 0.86012
Target:  5'- gCGGCGGuuucguaccagGGCg-CCACgguGUuuGAGCCCg -3'
miRNA:   3'- -GCCGCC-----------UCGaaGGUG---UAggCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 129481 0.66 0.852756
Target:  5'- gCGGCGuGAGCgcgagGCGUCgGAGCUCg -3'
miRNA:   3'- -GCCGC-CUCGaagg-UGUAGgCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 117709 0.66 0.852756
Target:  5'- gGGUGGGGU--CgGCGUUaCGAGCCCg -3'
miRNA:   3'- gCCGCCUCGaaGgUGUAG-GCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 233689 0.66 0.845975
Target:  5'- gCGGCGGA-UUUCCGCGcgggggacgggguagCCGAGCgCUg -3'
miRNA:   3'- -GCCGCCUcGAAGGUGUa--------------GGCUCGgGA- -5'
29934 5' -59.6 NC_006273.1 + 114529 0.66 0.845212
Target:  5'- aCGGCGGGcguuaugacacGCggCCGCcuuaaggCCGAGUCCa -3'
miRNA:   3'- -GCCGCCU-----------CGaaGGUGua-----GGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 189004 0.66 0.837494
Target:  5'- gCGGCGcGGGUaUCgGCGUCgGGGgCCUg -3'
miRNA:   3'- -GCCGC-CUCGaAGgUGUAGgCUCgGGA- -5'
29934 5' -59.6 NC_006273.1 + 197234 0.66 0.837494
Target:  5'- gCGGCGGAGCUgUCGCAcuuUCUGcGCgCg -3'
miRNA:   3'- -GCCGCCUCGAaGGUGU---AGGCuCGgGa -5'
29934 5' -59.6 NC_006273.1 + 156837 0.66 0.837494
Target:  5'- cCGGUGGGuCUuugUCCGCGUgCGcGCCCa -3'
miRNA:   3'- -GCCGCCUcGA---AGGUGUAgGCuCGGGa -5'
29934 5' -59.6 NC_006273.1 + 194860 0.66 0.837494
Target:  5'- gCGGCGGAGCgcuugcggcgCCAUAaaggcgCUuAGCCCUg -3'
miRNA:   3'- -GCCGCCUCGaa--------GGUGUa-----GGcUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 234798 0.66 0.837494
Target:  5'- gCGGCGGAGCgcuugcggcgCCAUAaaggcgCUuAGCCCUg -3'
miRNA:   3'- -GCCGCCUCGaa--------GGUGUa-----GGcUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 2341 0.66 0.837494
Target:  5'- gCGGCGGAGCUgUCGCAcuuUCUGcGCgCg -3'
miRNA:   3'- -GCCGCCUCGAaGGUGU---AGGCuCGgGa -5'
29934 5' -59.6 NC_006273.1 + 70897 0.67 0.821557
Target:  5'- aCGGUGGAcggGUUUCaGCGUCCG-GCCUc -3'
miRNA:   3'- -GCCGCCU---CGAAGgUGUAGGCuCGGGa -5'
29934 5' -59.6 NC_006273.1 + 104287 0.67 0.813352
Target:  5'- cCGGUaGAGCggCCGCGUCUcGGCCUc -3'
miRNA:   3'- -GCCGcCUCGaaGGUGUAGGcUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 45860 0.67 0.813352
Target:  5'- uCGGCGGuaccggacuGGCUUcCCugGUCCuGGCCa- -3'
miRNA:   3'- -GCCGCC---------UCGAA-GGugUAGGcUCGGga -5'
29934 5' -59.6 NC_006273.1 + 36763 0.67 0.813352
Target:  5'- cCGGCGG-GUggCCugAgcacgCCGAGgCCCa -3'
miRNA:   3'- -GCCGCCuCGaaGGugUa----GGCUC-GGGa -5'
29934 5' -59.6 NC_006273.1 + 41383 0.67 0.799919
Target:  5'- uGGCGGGGUUcauaUCCccgggcaacggcgcCGUCgGAGCCCa -3'
miRNA:   3'- gCCGCCUCGA----AGGu-------------GUAGgCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 112476 0.67 0.779122
Target:  5'- uGGCaGGAGCUUCCGCcGUCCcacacGGUCUUu -3'
miRNA:   3'- gCCG-CCUCGAAGGUG-UAGGc----UCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.