miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29934 5' -59.6 NC_006273.1 + 61078 1.08 0.002653
Target:  5'- gCGGCGGAGCUUCCACAUCCGAGCCCUg -3'
miRNA:   3'- -GCCGCCUCGAAGGUGUAGGCUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 167323 0.76 0.331573
Target:  5'- gCGGCGGcAGCggcggCCACGgcggcgcuggCCGAGCCCa -3'
miRNA:   3'- -GCCGCC-UCGaa---GGUGUa---------GGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 125267 0.73 0.458398
Target:  5'- gCGGCGucagagcGAGCguggCGCGUCCGGGCCCg -3'
miRNA:   3'- -GCCGC-------CUCGaag-GUGUAGGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 141233 0.73 0.485121
Target:  5'- gGGCGGAGCgguaauuUUCCACcgCCGcgacccauGCCCg -3'
miRNA:   3'- gCCGCCUCG-------AAGGUGuaGGCu-------CGGGa -5'
29934 5' -59.6 NC_006273.1 + 213129 0.72 0.495106
Target:  5'- aCGGCGGAGCcgcgUCGCucgCCGGcGCCCg -3'
miRNA:   3'- -GCCGCCUCGaa--GGUGua-GGCU-CGGGa -5'
29934 5' -59.6 NC_006273.1 + 233664 0.72 0.522789
Target:  5'- cCGGCGcAGC-UCC-CGUCCGAGCgCCg -3'
miRNA:   3'- -GCCGCcUCGaAGGuGUAGGCUCG-GGa -5'
29934 5' -59.6 NC_006273.1 + 38772 0.72 0.522789
Target:  5'- cCGGCGcAGC-UCC-CGUCCGAGCgCCg -3'
miRNA:   3'- -GCCGCcUCGaAGGuGUAGGCUCG-GGa -5'
29934 5' -59.6 NC_006273.1 + 44873 0.71 0.560575
Target:  5'- uGGCGccccGGCUUcauuauaacgCCACGUCgGAGCCCUg -3'
miRNA:   3'- gCCGCc---UCGAA----------GGUGUAGgCUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 72249 0.71 0.578795
Target:  5'- gCGGUGGuGCcUCCGCcgCCucagccgGAGCCCUc -3'
miRNA:   3'- -GCCGCCuCGaAGGUGuaGG-------CUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 122917 0.71 0.599074
Target:  5'- aCGGCGGaAGCUccugCCACG-CCGGuCCCUg -3'
miRNA:   3'- -GCCGCC-UCGAa---GGUGUaGGCUcGGGA- -5'
29934 5' -59.6 NC_006273.1 + 68797 0.7 0.64764
Target:  5'- uGGCGGGGCUggUUGCuuuUCCuGGCCCUg -3'
miRNA:   3'- gCCGCCUCGAa-GGUGu--AGGcUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 116316 0.69 0.676699
Target:  5'- aCGGCGGGGUUcUCUuCGUCgCGGGCCa- -3'
miRNA:   3'- -GCCGCCUCGA-AGGuGUAG-GCUCGGga -5'
29934 5' -59.6 NC_006273.1 + 104969 0.69 0.68633
Target:  5'- gGGC-GAGUUUgCCAUGUCCGAGgCCg -3'
miRNA:   3'- gCCGcCUCGAA-GGUGUAGGCUCgGGa -5'
29934 5' -59.6 NC_006273.1 + 177136 0.69 0.68633
Target:  5'- aGGUGGAGCUucucUCCACcaagGUCUG-GCCUUc -3'
miRNA:   3'- gCCGCCUCGA----AGGUG----UAGGCuCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 183744 0.69 0.68633
Target:  5'- cCGGCGcaacGGGUgcugUCCGCGccgCCGAGCCUg -3'
miRNA:   3'- -GCCGC----CUCGa---AGGUGUa--GGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 140989 0.68 0.72437
Target:  5'- aGGUccGGAGCgggCCGCGcCCGGuGCCCg -3'
miRNA:   3'- gCCG--CCUCGaa-GGUGUaGGCU-CGGGa -5'
29934 5' -59.6 NC_006273.1 + 132206 0.68 0.73372
Target:  5'- uCGGCGGccGCagCCACAUC-GGGCCUg -3'
miRNA:   3'- -GCCGCCu-CGaaGGUGUAGgCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 93619 0.68 0.742068
Target:  5'- gCGGCGGccugcgcAGCUUCgCGCAUCCacuggcgccggcGcGCCCUg -3'
miRNA:   3'- -GCCGCC-------UCGAAG-GUGUAGG------------CuCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 80689 0.68 0.752175
Target:  5'- uCGGaagGGAaCUcguagacgUCCACGUCUGGGCCCa -3'
miRNA:   3'- -GCCg--CCUcGA--------AGGUGUAGGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 196712 0.68 0.770248
Target:  5'- uGGCaGGAGCUggCGCAguaCGAGCCg- -3'
miRNA:   3'- gCCG-CCUCGAagGUGUag-GCUCGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.