Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29934 | 5' | -59.6 | NC_006273.1 | + | 196712 | 0.68 | 0.770248 |
Target: 5'- uGGCaGGAGCUggCGCAguaCGAGCCg- -3' miRNA: 3'- gCCG-CCUCGAagGUGUag-GCUCGGga -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 1820 | 0.68 | 0.770248 |
Target: 5'- uGGCaGGAGCUggCGCAguaCGAGCCg- -3' miRNA: 3'- gCCG-CCUCGAagGUGUag-GCUCGGga -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 80689 | 0.68 | 0.752175 |
Target: 5'- uCGGaagGGAaCUcguagacgUCCACGUCUGGGCCCa -3' miRNA: 3'- -GCCg--CCUcGA--------AGGUGUAGGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 93619 | 0.68 | 0.742068 |
Target: 5'- gCGGCGGccugcgcAGCUUCgCGCAUCCacuggcgccggcGcGCCCUg -3' miRNA: 3'- -GCCGCC-------UCGAAG-GUGUAGG------------CuCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 132206 | 0.68 | 0.73372 |
Target: 5'- uCGGCGGccGCagCCACAUC-GGGCCUg -3' miRNA: 3'- -GCCGCCu-CGaaGGUGUAGgCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 140989 | 0.68 | 0.72437 |
Target: 5'- aGGUccGGAGCgggCCGCGcCCGGuGCCCg -3' miRNA: 3'- gCCG--CCUCGaa-GGUGUaGGCU-CGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 183744 | 0.69 | 0.68633 |
Target: 5'- cCGGCGcaacGGGUgcugUCCGCGccgCCGAGCCUg -3' miRNA: 3'- -GCCGC----CUCGa---AGGUGUa--GGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 104969 | 0.69 | 0.68633 |
Target: 5'- gGGC-GAGUUUgCCAUGUCCGAGgCCg -3' miRNA: 3'- gCCGcCUCGAA-GGUGUAGGCUCgGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 177136 | 0.69 | 0.68633 |
Target: 5'- aGGUGGAGCUucucUCCACcaagGUCUG-GCCUUc -3' miRNA: 3'- gCCGCCUCGA----AGGUG----UAGGCuCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 116316 | 0.69 | 0.676699 |
Target: 5'- aCGGCGGGGUUcUCUuCGUCgCGGGCCa- -3' miRNA: 3'- -GCCGCCUCGA-AGGuGUAG-GCUCGGga -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 68797 | 0.7 | 0.64764 |
Target: 5'- uGGCGGGGCUggUUGCuuuUCCuGGCCCUg -3' miRNA: 3'- gCCGCCUCGAa-GGUGu--AGGcUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 122917 | 0.71 | 0.599074 |
Target: 5'- aCGGCGGaAGCUccugCCACG-CCGGuCCCUg -3' miRNA: 3'- -GCCGCC-UCGAa---GGUGUaGGCUcGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 72249 | 0.71 | 0.578795 |
Target: 5'- gCGGUGGuGCcUCCGCcgCCucagccgGAGCCCUc -3' miRNA: 3'- -GCCGCCuCGaAGGUGuaGG-------CUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 44873 | 0.71 | 0.560575 |
Target: 5'- uGGCGccccGGCUUcauuauaacgCCACGUCgGAGCCCUg -3' miRNA: 3'- gCCGCc---UCGAA----------GGUGUAGgCUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 38772 | 0.72 | 0.522789 |
Target: 5'- cCGGCGcAGC-UCC-CGUCCGAGCgCCg -3' miRNA: 3'- -GCCGCcUCGaAGGuGUAGGCUCG-GGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 233664 | 0.72 | 0.522789 |
Target: 5'- cCGGCGcAGC-UCC-CGUCCGAGCgCCg -3' miRNA: 3'- -GCCGCcUCGaAGGuGUAGGCUCG-GGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 213129 | 0.72 | 0.495106 |
Target: 5'- aCGGCGGAGCcgcgUCGCucgCCGGcGCCCg -3' miRNA: 3'- -GCCGCCUCGaa--GGUGua-GGCU-CGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 141233 | 0.73 | 0.485121 |
Target: 5'- gGGCGGAGCgguaauuUUCCACcgCCGcgacccauGCCCg -3' miRNA: 3'- gCCGCCUCG-------AAGGUGuaGGCu-------CGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 125267 | 0.73 | 0.458398 |
Target: 5'- gCGGCGucagagcGAGCguggCGCGUCCGGGCCCg -3' miRNA: 3'- -GCCGC-------CUCGaag-GUGUAGGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 167323 | 0.76 | 0.331573 |
Target: 5'- gCGGCGGcAGCggcggCCACGgcggcgcuggCCGAGCCCa -3' miRNA: 3'- -GCCGCC-UCGaa---GGUGUa---------GGCUCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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