Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29934 | 5' | -59.6 | NC_006273.1 | + | 1820 | 0.68 | 0.770248 |
Target: 5'- uGGCaGGAGCUggCGCAguaCGAGCCg- -3' miRNA: 3'- gCCG-CCUCGAagGUGUag-GCUCGGga -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 2341 | 0.66 | 0.837494 |
Target: 5'- gCGGCGGAGCUgUCGCAcuuUCUGcGCgCg -3' miRNA: 3'- -GCCGCCUCGAaGGUGU---AGGCuCGgGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 36763 | 0.67 | 0.813352 |
Target: 5'- cCGGCGG-GUggCCugAgcacgCCGAGgCCCa -3' miRNA: 3'- -GCCGCCuCGaaGGugUa----GGCUC-GGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 38772 | 0.72 | 0.522789 |
Target: 5'- cCGGCGcAGC-UCC-CGUCCGAGCgCCg -3' miRNA: 3'- -GCCGCcUCGaAGGuGUAGGCUCG-GGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 41383 | 0.67 | 0.799919 |
Target: 5'- uGGCGGGGUUcauaUCCccgggcaacggcgcCGUCgGAGCCCa -3' miRNA: 3'- gCCGCCUCGA----AGGu-------------GUAGgCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 44873 | 0.71 | 0.560575 |
Target: 5'- uGGCGccccGGCUUcauuauaacgCCACGUCgGAGCCCUg -3' miRNA: 3'- gCCGCc---UCGAA----------GGUGUAGgCUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 45860 | 0.67 | 0.813352 |
Target: 5'- uCGGCGGuaccggacuGGCUUcCCugGUCCuGGCCa- -3' miRNA: 3'- -GCCGCC---------UCGAA-GGugUAGGcUCGGga -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 46317 | 0.66 | 0.867298 |
Target: 5'- gGGCGcaagaAGCggCCGCcuacgccgccgGUCCGGGCCCc -3' miRNA: 3'- gCCGCc----UCGaaGGUG-----------UAGGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 61078 | 1.08 | 0.002653 |
Target: 5'- gCGGCGGAGCUUCCACAUCCGAGCCCUg -3' miRNA: 3'- -GCCGCCUCGAAGGUGUAGGCUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 61234 | 0.66 | 0.86012 |
Target: 5'- gCGGCGGuGCag-CAgAUgCGGGCCCa -3' miRNA: 3'- -GCCGCCuCGaagGUgUAgGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 68797 | 0.7 | 0.64764 |
Target: 5'- uGGCGGGGCUggUUGCuuuUCCuGGCCCUg -3' miRNA: 3'- gCCGCCUCGAa-GGUGu--AGGcUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 70897 | 0.67 | 0.821557 |
Target: 5'- aCGGUGGAcggGUUUCaGCGUCCG-GCCUc -3' miRNA: 3'- -GCCGCCU---CGAAGgUGUAGGCuCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 72249 | 0.71 | 0.578795 |
Target: 5'- gCGGUGGuGCcUCCGCcgCCucagccgGAGCCCUc -3' miRNA: 3'- -GCCGCCuCGaAGGUGuaGG-------CUCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 80689 | 0.68 | 0.752175 |
Target: 5'- uCGGaagGGAaCUcguagacgUCCACGUCUGGGCCCa -3' miRNA: 3'- -GCCg--CCUcGA--------AGGUGUAGGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 93619 | 0.68 | 0.742068 |
Target: 5'- gCGGCGGccugcgcAGCUUCgCGCAUCCacuggcgccggcGcGCCCUg -3' miRNA: 3'- -GCCGCC-------UCGAAG-GUGUAGG------------CuCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 95642 | 0.66 | 0.865878 |
Target: 5'- aGGCGGAGgaagauuCGUCUGAGCCUg -3' miRNA: 3'- gCCGCCUCgaaggu-GUAGGCUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 104287 | 0.67 | 0.813352 |
Target: 5'- cCGGUaGAGCggCCGCGUCUcGGCCUc -3' miRNA: 3'- -GCCGcCUCGaaGGUGUAGGcUCGGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 104969 | 0.69 | 0.68633 |
Target: 5'- gGGC-GAGUUUgCCAUGUCCGAGgCCg -3' miRNA: 3'- gCCGcCUCGAA-GGUGUAGGCUCgGGa -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 112476 | 0.67 | 0.779122 |
Target: 5'- uGGCaGGAGCUUCCGCcGUCCcacacGGUCUUu -3' miRNA: 3'- gCCG-CCUCGAAGGUG-UAGGc----UCGGGA- -5' |
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29934 | 5' | -59.6 | NC_006273.1 | + | 114529 | 0.66 | 0.845212 |
Target: 5'- aCGGCGGGcguuaugacacGCggCCGCcuuaaggCCGAGUCCa -3' miRNA: 3'- -GCCGCCU-----------CGaaGGUGua-----GGCUCGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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