miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29934 5' -59.6 NC_006273.1 + 167323 0.76 0.331573
Target:  5'- gCGGCGGcAGCggcggCCACGgcggcgcuggCCGAGCCCa -3'
miRNA:   3'- -GCCGCC-UCGaa---GGUGUa---------GGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 104287 0.67 0.813352
Target:  5'- cCGGUaGAGCggCCGCGUCUcGGCCUc -3'
miRNA:   3'- -GCCGcCUCGaaGGUGUAGGcUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 189004 0.66 0.837494
Target:  5'- gCGGCGcGGGUaUCgGCGUCgGGGgCCUg -3'
miRNA:   3'- -GCCGC-CUCGaAGgUGUAGgCUCgGGA- -5'
29934 5' -59.6 NC_006273.1 + 194860 0.66 0.837494
Target:  5'- gCGGCGGAGCgcuugcggcgCCAUAaaggcgCUuAGCCCUg -3'
miRNA:   3'- -GCCGCCUCGaa--------GGUGUa-----GGcUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 197234 0.66 0.837494
Target:  5'- gCGGCGGAGCUgUCGCAcuuUCUGcGCgCg -3'
miRNA:   3'- -GCCGCCUCGAaGGUGU---AGGCuCGgGa -5'
29934 5' -59.6 NC_006273.1 + 156837 0.66 0.837494
Target:  5'- cCGGUGGGuCUuugUCCGCGUgCGcGCCCa -3'
miRNA:   3'- -GCCGCCUcGA---AGGUGUAgGCuCGGGa -5'
29934 5' -59.6 NC_006273.1 + 117709 0.66 0.852756
Target:  5'- gGGUGGGGU--CgGCGUUaCGAGCCCg -3'
miRNA:   3'- gCCGCCUCGaaGgUGUAG-GCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 129481 0.66 0.852756
Target:  5'- gCGGCGuGAGCgcgagGCGUCgGAGCUCg -3'
miRNA:   3'- -GCCGC-CUCGaagg-UGUAGgCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 61234 0.66 0.86012
Target:  5'- gCGGCGGuGCag-CAgAUgCGGGCCCa -3'
miRNA:   3'- -GCCGCCuCGaagGUgUAgGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 41383 0.67 0.799919
Target:  5'- uGGCGGGGUUcauaUCCccgggcaacggcgcCGUCgGAGCCCa -3'
miRNA:   3'- gCCGCCUCGA----AGGu-------------GUAGgCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 112476 0.67 0.779122
Target:  5'- uGGCaGGAGCUUCCGCcGUCCcacacGGUCUUu -3'
miRNA:   3'- gCCG-CCUCGAAGGUG-UAGGc----UCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 196712 0.68 0.770248
Target:  5'- uGGCaGGAGCUggCGCAguaCGAGCCg- -3'
miRNA:   3'- gCCG-CCUCGAagGUGUag-GCUCGGga -5'
29934 5' -59.6 NC_006273.1 + 125267 0.73 0.458398
Target:  5'- gCGGCGucagagcGAGCguggCGCGUCCGGGCCCg -3'
miRNA:   3'- -GCCGC-------CUCGaag-GUGUAGGCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 233664 0.72 0.522789
Target:  5'- cCGGCGcAGC-UCC-CGUCCGAGCgCCg -3'
miRNA:   3'- -GCCGCcUCGaAGGuGUAGGCUCG-GGa -5'
29934 5' -59.6 NC_006273.1 + 44873 0.71 0.560575
Target:  5'- uGGCGccccGGCUUcauuauaacgCCACGUCgGAGCCCUg -3'
miRNA:   3'- gCCGCc---UCGAA----------GGUGUAGgCUCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 116316 0.69 0.676699
Target:  5'- aCGGCGGGGUUcUCUuCGUCgCGGGCCa- -3'
miRNA:   3'- -GCCGCCUCGA-AGGuGUAG-GCUCGGga -5'
29934 5' -59.6 NC_006273.1 + 177136 0.69 0.68633
Target:  5'- aGGUGGAGCUucucUCCACcaagGUCUG-GCCUUc -3'
miRNA:   3'- gCCGCCUCGA----AGGUG----UAGGCuCGGGA- -5'
29934 5' -59.6 NC_006273.1 + 104969 0.69 0.68633
Target:  5'- gGGC-GAGUUUgCCAUGUCCGAGgCCg -3'
miRNA:   3'- gCCGcCUCGAA-GGUGUAGGCUCgGGa -5'
29934 5' -59.6 NC_006273.1 + 132206 0.68 0.73372
Target:  5'- uCGGCGGccGCagCCACAUC-GGGCCUg -3'
miRNA:   3'- -GCCGCCu-CGaaGGUGUAGgCUCGGGa -5'
29934 5' -59.6 NC_006273.1 + 80689 0.68 0.752175
Target:  5'- uCGGaagGGAaCUcguagacgUCCACGUCUGGGCCCa -3'
miRNA:   3'- -GCCg--CCUcGA--------AGGUGUAGGCUCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.