miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 3' -55.5 NC_006273.1 + 49660 0.66 0.972726
Target:  5'- uGACagaaGCcgUCGACaGCGUGGaCGacuGGGCGAc -3'
miRNA:   3'- -CUGg---CGa-AGCUG-CGCACC-GU---UCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 200780 0.66 0.972726
Target:  5'- --gCGCUaCGGCGCacGGCAAGuACGAc -3'
miRNA:   3'- cugGCGAaGCUGCGcaCCGUUC-UGCU- -5'
29936 3' -55.5 NC_006273.1 + 112335 0.66 0.972726
Target:  5'- uGCgGCUgCGACGCGaaacGGUgcGACGAc -3'
miRNA:   3'- cUGgCGAaGCUGCGCa---CCGuuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 34159 0.66 0.972191
Target:  5'- cGCCGCUUCGGCucgcgccauaaaCGUGGC--GugGAa -3'
miRNA:   3'- cUGGCGAAGCUGc-----------GCACCGuuCugCU- -5'
29936 3' -55.5 NC_006273.1 + 234472 0.66 0.969977
Target:  5'- cGGCCGCgaccgaGGgGCGgggGGCGcGGCGAc -3'
miRNA:   3'- -CUGGCGaag---CUgCGCa--CCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 40470 0.66 0.969977
Target:  5'- uACCGCgggauacgUCG--GCGUGGuCGAGGCGGc -3'
miRNA:   3'- cUGGCGa-------AGCugCGCACC-GUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 207311 0.66 0.969977
Target:  5'- aACCGC-UCGAguCGCGUGuGUuuuGACGGg -3'
miRNA:   3'- cUGGCGaAGCU--GCGCAC-CGuu-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 152895 0.66 0.969977
Target:  5'- gGGCCGUgggUGGCGCGgUGGCcuccguggucgAAGGCGu -3'
miRNA:   3'- -CUGGCGaa-GCUGCGC-ACCG-----------UUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 39579 0.66 0.969977
Target:  5'- cGGCCGCgaccgaGGgGCGgggGGCGcGGCGAc -3'
miRNA:   3'- -CUGGCGaag---CUgCGCa--CCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 110559 0.66 0.969977
Target:  5'- aGGgCGCUUUGAaaaguaCGCGUGG-AAGAUGGc -3'
miRNA:   3'- -CUgGCGAAGCU------GCGCACCgUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 144034 0.66 0.969691
Target:  5'- cGACCGUUccUCGA-GCGUGGUGAucgcuccucuguuGGCGGg -3'
miRNA:   3'- -CUGGCGA--AGCUgCGCACCGUU-------------CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 90977 0.66 0.967034
Target:  5'- cGCCGCcgCGGCGcCG-GGCAGacagccgcuGACGAa -3'
miRNA:   3'- cUGGCGaaGCUGC-GCaCCGUU---------CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 233526 0.66 0.967034
Target:  5'- cGGCCGUagcagCGACGCGgGGUgcGGCGc -3'
miRNA:   3'- -CUGGCGaa---GCUGCGCaCCGuuCUGCu -5'
29936 3' -55.5 NC_006273.1 + 129471 0.66 0.963894
Target:  5'- cAUCGCggCGGCgGCGUGagcGCGAGGCGu -3'
miRNA:   3'- cUGGCGaaGCUG-CGCAC---CGUUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 36812 0.66 0.963894
Target:  5'- cGCUGCUcaCGACGUGUGGUguaacugcgGAGACu- -3'
miRNA:   3'- cUGGCGAa-GCUGCGCACCG---------UUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 151821 0.66 0.96055
Target:  5'- cGCCGCgaggCGuaGCGCGUGaGCAGGuCGc -3'
miRNA:   3'- cUGGCGaa--GC--UGCGCAC-CGUUCuGCu -5'
29936 3' -55.5 NC_006273.1 + 227287 0.66 0.96055
Target:  5'- cGCUGCUUuucuggCGACGCGUGGCGuuauCGc -3'
miRNA:   3'- cUGGCGAA------GCUGCGCACCGUucu-GCu -5'
29936 3' -55.5 NC_006273.1 + 102277 0.66 0.96055
Target:  5'- --aCGCUgagaaUGACGCGUGGC--GGCGGu -3'
miRNA:   3'- cugGCGAa----GCUGCGCACCGuuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 213102 0.66 0.960204
Target:  5'- aGCUGCUguUCGgccaccaGCGCGUGGCugcGAUGGa -3'
miRNA:   3'- cUGGCGA--AGC-------UGCGCACCGuu-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 173304 0.67 0.956999
Target:  5'- uGCCGCggcgcucggUCGACGCGUuGUuacuGGCGAu -3'
miRNA:   3'- cUGGCGa--------AGCUGCGCAcCGuu--CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.