miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 3' -55.5 NC_006273.1 + 49514 1.09 0.005185
Target:  5'- cGACCGCUUCGACGCGUGGCAAGACGAg -3'
miRNA:   3'- -CUGGCGAAGCUGCGCACCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 147489 0.76 0.509132
Target:  5'- -uUUGCUUCGGCGUGcccGGCGAGACGGg -3'
miRNA:   3'- cuGGCGAAGCUGCGCa--CCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 209458 0.75 0.596487
Target:  5'- gGGCCGCUUCGugGaaauGCGAGACGGc -3'
miRNA:   3'- -CUGGCGAAGCugCgcacCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 196698 0.74 0.616324
Target:  5'- uGCUGCUg-GGCGCGUGGCAGGAg-- -3'
miRNA:   3'- cUGGCGAagCUGCGCACCGUUCUgcu -5'
29936 3' -55.5 NC_006273.1 + 1806 0.74 0.616324
Target:  5'- uGCUGCUg-GGCGCGUGGCAGGAg-- -3'
miRNA:   3'- cUGGCGAagCUGCGCACCGUUCUgcu -5'
29936 3' -55.5 NC_006273.1 + 164236 0.74 0.636205
Target:  5'- --gCGCggCGACGgGUGGCAGGACu- -3'
miRNA:   3'- cugGCGaaGCUGCgCACCGUUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 189137 0.74 0.665986
Target:  5'- uACCGUgUCGACGC-UGGCcgAGGACGAc -3'
miRNA:   3'- cUGGCGaAGCUGCGcACCG--UUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 93326 0.73 0.685723
Target:  5'- cGCCGCUggCGGCGCuGccGCGAGACGAc -3'
miRNA:   3'- cUGGCGAa-GCUGCG-CacCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 18796 0.72 0.724629
Target:  5'- uGCCGCUUCGAcCGCGgauuGCGcGGCGAg -3'
miRNA:   3'- cUGGCGAAGCU-GCGCac--CGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 188410 0.72 0.734188
Target:  5'- cACCGCcUCGAC-CGUGGUgaAGGGCGGu -3'
miRNA:   3'- cUGGCGaAGCUGcGCACCG--UUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 172210 0.72 0.762331
Target:  5'- aGGCCGCgcCGGcCGCGccGCGAGACGGa -3'
miRNA:   3'- -CUGGCGaaGCU-GCGCacCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 69699 0.71 0.789494
Target:  5'- cGGCCGC--CGAuCGCGUaGGCAGcGGCGAa -3'
miRNA:   3'- -CUGGCGaaGCU-GCGCA-CCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 202548 0.71 0.806948
Target:  5'- gGACCGCagCGugGCcggcGUGGCGGccGACGGc -3'
miRNA:   3'- -CUGGCGaaGCugCG----CACCGUU--CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 136765 0.7 0.840001
Target:  5'- cGACCGCgacgaggUCG-CGCGUacGGaCGAGugGAa -3'
miRNA:   3'- -CUGGCGa------AGCuGCGCA--CC-GUUCugCU- -5'
29936 3' -55.5 NC_006273.1 + 72577 0.7 0.847836
Target:  5'- cACCGCUUCaGACGUGUccagcGGCAGcGACa- -3'
miRNA:   3'- cUGGCGAAG-CUGCGCA-----CCGUU-CUGcu -5'
29936 3' -55.5 NC_006273.1 + 120296 0.7 0.862945
Target:  5'- cGGCCGCUUcCGACGagggucccucacCG-GGCGAgGACGAu -3'
miRNA:   3'- -CUGGCGAA-GCUGC------------GCaCCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 218180 0.69 0.870208
Target:  5'- -uUCGUcgUCGuCGCGUGGCAuGGGCGGc -3'
miRNA:   3'- cuGGCGa-AGCuGCGCACCGU-UCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 99819 0.69 0.870208
Target:  5'- uGCUGCUgugguugCGACG-GUGGCuGGGCGGg -3'
miRNA:   3'- cUGGCGAa------GCUGCgCACCGuUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 167267 0.69 0.877269
Target:  5'- uGACCGUggCgGugGCG-GGCAuGACGGg -3'
miRNA:   3'- -CUGGCGaaG-CugCGCaCCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 63745 0.69 0.884124
Target:  5'- -uCUGUUUCGgucugGCGCGUGGCcGGGCGc -3'
miRNA:   3'- cuGGCGAAGC-----UGCGCACCGuUCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.