miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 3' -55.5 NC_006273.1 + 61588 0.67 0.956999
Target:  5'- cGGCCGUUUgGccaccGCGCGcgcguccaugaUGGCGAGGCGc -3'
miRNA:   3'- -CUGGCGAAgC-----UGCGC-----------ACCGUUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 1383 0.67 0.955519
Target:  5'- cGCCGCgg-GACGCGUGGaucgugcugguGGCGAc -3'
miRNA:   3'- cUGGCGaagCUGCGCACCguu--------CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 196276 0.67 0.955519
Target:  5'- cGCCGCgg-GACGCGUGGaucgugcugguGGCGAc -3'
miRNA:   3'- cUGGCGaagCUGCGCACCguu--------CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 163030 0.67 0.953235
Target:  5'- cGACCcaGCagCGcccacaGCGCG-GGCGAGACGGu -3'
miRNA:   3'- -CUGG--CGaaGC------UGCGCaCCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 106569 0.67 0.953235
Target:  5'- aGGCCaGCU---GCGUGUGGCAuuguuuGACGAu -3'
miRNA:   3'- -CUGG-CGAagcUGCGCACCGUu-----CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 144629 0.67 0.953235
Target:  5'- gGACCuguGCUUCGGCGUGcucaaGCAGGGCa- -3'
miRNA:   3'- -CUGG---CGAAGCUGCGCac---CGUUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 116994 0.67 0.952847
Target:  5'- cACUGCUgUCGACGCGUcgGGCGaucccuuucgcucAGACa- -3'
miRNA:   3'- cUGGCGA-AGCUGCGCA--CCGU-------------UCUGcu -5'
29936 3' -55.5 NC_006273.1 + 99195 0.67 0.949255
Target:  5'- aGACCGCUUUGACGUa-GGUAAu-CGAg -3'
miRNA:   3'- -CUGGCGAAGCUGCGcaCCGUUcuGCU- -5'
29936 3' -55.5 NC_006273.1 + 161440 0.67 0.949255
Target:  5'- aGCCGCgUCGACGuCGuUGGCGGucCGGa -3'
miRNA:   3'- cUGGCGaAGCUGC-GC-ACCGUUcuGCU- -5'
29936 3' -55.5 NC_006273.1 + 115336 0.67 0.945057
Target:  5'- gGGCCGCUgCGugGUG-GGCGaacaGGAcCGAc -3'
miRNA:   3'- -CUGGCGAaGCugCGCaCCGU----UCU-GCU- -5'
29936 3' -55.5 NC_006273.1 + 212004 0.67 0.945057
Target:  5'- aACCGCUgguaUCGAUGC--GGC-AGGCGAa -3'
miRNA:   3'- cUGGCGA----AGCUGCGcaCCGuUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 124230 0.67 0.943754
Target:  5'- aGGuuGgggUCGACGCGUGGCAugcuuggugucugcGGGCGc -3'
miRNA:   3'- -CUggCga-AGCUGCGCACCGU--------------UCUGCu -5'
29936 3' -55.5 NC_006273.1 + 6978 0.67 0.940637
Target:  5'- cGCCGCggucUCGAUGCGUgauguuuaucccGGUggGACa- -3'
miRNA:   3'- cUGGCGa---AGCUGCGCA------------CCGuuCUGcu -5'
29936 3' -55.5 NC_006273.1 + 47301 0.67 0.940637
Target:  5'- -gUCGCUUCGACaCGguggaaauggUGGaCGAGACGAg -3'
miRNA:   3'- cuGGCGAAGCUGcGC----------ACC-GUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 74177 0.67 0.940637
Target:  5'- cACCuacgUGGCGCGccGGCGAGACGAg -3'
miRNA:   3'- cUGGcgaaGCUGCGCa-CCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 197052 0.67 0.935994
Target:  5'- aGCgGCgaCGACG-GUGGCGGcGACGAc -3'
miRNA:   3'- cUGgCGaaGCUGCgCACCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 61902 0.68 0.9331
Target:  5'- gGACCGCUUccugcgacaccagcaCGACG-GcGGCGgAGACGAg -3'
miRNA:   3'- -CUGGCGAA---------------GCUGCgCaCCGU-UCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 145075 0.68 0.931126
Target:  5'- aGCCGCgggCGACGCcgcUGGCGGcGGCGc -3'
miRNA:   3'- cUGGCGaa-GCUGCGc--ACCGUU-CUGCu -5'
29936 3' -55.5 NC_006273.1 + 60227 0.68 0.931126
Target:  5'- aGACCGCUacUC-ACGCGUccaccgcgacugGGCAcGGCGGg -3'
miRNA:   3'- -CUGGCGA--AGcUGCGCA------------CCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 82485 0.68 0.931126
Target:  5'- cACgGUg-CGGCGCGUGGCcgagGAGugGAa -3'
miRNA:   3'- cUGgCGaaGCUGCGCACCG----UUCugCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.