miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 3' -55.5 NC_006273.1 + 1383 0.67 0.955519
Target:  5'- cGCCGCgg-GACGCGUGGaucgugcugguGGCGAc -3'
miRNA:   3'- cUGGCGaagCUGCGCACCguu--------CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 1806 0.74 0.616324
Target:  5'- uGCUGCUg-GGCGCGUGGCAGGAg-- -3'
miRNA:   3'- cUGGCGAagCUGCGCACCGUUCUgcu -5'
29936 3' -55.5 NC_006273.1 + 4100 0.68 0.931126
Target:  5'- uGGCUGCUgacCGACGCGUcaggauGuGCAGGGCa- -3'
miRNA:   3'- -CUGGCGAa--GCUGCGCA------C-CGUUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 6978 0.67 0.940637
Target:  5'- cGCCGCggucUCGAUGCGUgauguuuaucccGGUggGACa- -3'
miRNA:   3'- cUGGCGa---AGCUGCGCA------------CCGuuCUGcu -5'
29936 3' -55.5 NC_006273.1 + 18413 0.68 0.9094
Target:  5'- --aCGCUgCGGC-CGUGGCcAAGACGGc -3'
miRNA:   3'- cugGCGAaGCUGcGCACCG-UUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 18796 0.72 0.724629
Target:  5'- uGCCGCUUCGAcCGCGgauuGCGcGGCGAg -3'
miRNA:   3'- cUGGCGAAGCU-GCGCac--CGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 34159 0.66 0.972191
Target:  5'- cGCCGCUUCGGCucgcgccauaaaCGUGGC--GugGAa -3'
miRNA:   3'- cUGGCGAAGCUGc-----------GCACCGuuCugCU- -5'
29936 3' -55.5 NC_006273.1 + 36812 0.66 0.963894
Target:  5'- cGCUGCUcaCGACGUGUGGUguaacugcgGAGACu- -3'
miRNA:   3'- cUGGCGAa-GCUGCGCACCG---------UUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 39579 0.66 0.969977
Target:  5'- cGGCCGCgaccgaGGgGCGgggGGCGcGGCGAc -3'
miRNA:   3'- -CUGGCGaag---CUgCGCa--CCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 40470 0.66 0.969977
Target:  5'- uACCGCgggauacgUCG--GCGUGGuCGAGGCGGc -3'
miRNA:   3'- cUGGCGa-------AGCugCGCACC-GUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 47301 0.67 0.940637
Target:  5'- -gUCGCUUCGACaCGguggaaauggUGGaCGAGACGAg -3'
miRNA:   3'- cuGGCGAAGCUGcGC----------ACC-GUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 49514 1.09 0.005185
Target:  5'- cGACCGCUUCGACGCGUGGCAAGACGAg -3'
miRNA:   3'- -CUGGCGAAGCUGCGCACCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 49660 0.66 0.972726
Target:  5'- uGACagaaGCcgUCGACaGCGUGGaCGacuGGGCGAc -3'
miRNA:   3'- -CUGg---CGa-AGCUG-CGCACC-GU---UCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 60227 0.68 0.931126
Target:  5'- aGACCGCUacUC-ACGCGUccaccgcgacugGGCAcGGCGGg -3'
miRNA:   3'- -CUGGCGA--AGcUGCGCA------------CCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 61588 0.67 0.956999
Target:  5'- cGGCCGUUUgGccaccGCGCGcgcguccaugaUGGCGAGGCGc -3'
miRNA:   3'- -CUGGCGAAgC-----UGCGC-----------ACCGUUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 61902 0.68 0.9331
Target:  5'- gGACCGCUUccugcgacaccagcaCGACG-GcGGCGgAGACGAg -3'
miRNA:   3'- -CUGGCGAA---------------GCUGCgCaCCGU-UCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 63745 0.69 0.884124
Target:  5'- -uCUGUUUCGgucugGCGCGUGGCcGGGCGc -3'
miRNA:   3'- cuGGCGAAGC-----UGCGCACCGuUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 69699 0.71 0.789494
Target:  5'- cGGCCGC--CGAuCGCGUaGGCAGcGGCGAa -3'
miRNA:   3'- -CUGGCGaaGCU-GCGCA-CCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 72577 0.7 0.847836
Target:  5'- cACCGCUUCaGACGUGUccagcGGCAGcGACa- -3'
miRNA:   3'- cUGGCGAAG-CUGCGCA-----CCGUU-CUGcu -5'
29936 3' -55.5 NC_006273.1 + 74177 0.67 0.940637
Target:  5'- cACCuacgUGGCGCGccGGCGAGACGAg -3'
miRNA:   3'- cUGGcgaaGCUGCGCa-CCGUUCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.