miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 3' -55.5 NC_006273.1 + 76536 0.69 0.897198
Target:  5'- cGCCGC-UCGGCGCG-GcGCAcgaGGACGu -3'
miRNA:   3'- cUGGCGaAGCUGCGCaC-CGU---UCUGCu -5'
29936 3' -55.5 NC_006273.1 + 82485 0.68 0.931126
Target:  5'- cACgGUg-CGGCGCGUGGCcgagGAGugGAa -3'
miRNA:   3'- cUGgCGaaGCUGCGCACCG----UUCugCU- -5'
29936 3' -55.5 NC_006273.1 + 83349 0.68 0.926033
Target:  5'- gGACC-CggCGGCGcCGUGGUggGAgGAc -3'
miRNA:   3'- -CUGGcGaaGCUGC-GCACCGuuCUgCU- -5'
29936 3' -55.5 NC_006273.1 + 90977 0.66 0.967034
Target:  5'- cGCCGCcgCGGCGcCG-GGCAGacagccgcuGACGAa -3'
miRNA:   3'- cUGGCGaaGCUGC-GCaCCGUU---------CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 93326 0.73 0.685723
Target:  5'- cGCCGCUggCGGCGCuGccGCGAGACGAc -3'
miRNA:   3'- cUGGCGAa-GCUGCG-CacCGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 99195 0.67 0.949255
Target:  5'- aGACCGCUUUGACGUa-GGUAAu-CGAg -3'
miRNA:   3'- -CUGGCGAAGCUGCGcaCCGUUcuGCU- -5'
29936 3' -55.5 NC_006273.1 + 99819 0.69 0.870208
Target:  5'- uGCUGCUgugguugCGACG-GUGGCuGGGCGGg -3'
miRNA:   3'- cUGGCGAa------GCUGCgCACCGuUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 101301 0.68 0.920713
Target:  5'- cGCCGgUgccccCGAgUGCGUGGCGGGAgGAg -3'
miRNA:   3'- cUGGCgAa----GCU-GCGCACCGUUCUgCU- -5'
29936 3' -55.5 NC_006273.1 + 102277 0.66 0.96055
Target:  5'- --aCGCUgagaaUGACGCGUGGC--GGCGGu -3'
miRNA:   3'- cugGCGAa----GCUGCGCACCGuuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 106012 0.68 0.9094
Target:  5'- aACCGCUUUGGCuacggugguGUGUGGgGAGAUGc -3'
miRNA:   3'- cUGGCGAAGCUG---------CGCACCgUUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 106569 0.67 0.953235
Target:  5'- aGGCCaGCU---GCGUGUGGCAuuguuuGACGAu -3'
miRNA:   3'- -CUGG-CGAagcUGCGCACCGUu-----CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 110559 0.66 0.969977
Target:  5'- aGGgCGCUUUGAaaaguaCGCGUGG-AAGAUGGc -3'
miRNA:   3'- -CUgGCGAAGCU------GCGCACCgUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 112335 0.66 0.972726
Target:  5'- uGCgGCUgCGACGCGaaacGGUgcGACGAc -3'
miRNA:   3'- cUGgCGAaGCUGCGCa---CCGuuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 115336 0.67 0.945057
Target:  5'- gGGCCGCUgCGugGUG-GGCGaacaGGAcCGAc -3'
miRNA:   3'- -CUGGCGAaGCugCGCaCCGU----UCU-GCU- -5'
29936 3' -55.5 NC_006273.1 + 116994 0.67 0.952847
Target:  5'- cACUGCUgUCGACGCGUcgGGCGaucccuuucgcucAGACa- -3'
miRNA:   3'- cUGGCGA-AGCUGCGCA--CCGU-------------UCUGcu -5'
29936 3' -55.5 NC_006273.1 + 117055 0.69 0.899709
Target:  5'- cGGCCGUUgccgccucagaaccCGACGCGguaGCGAGGCGGc -3'
miRNA:   3'- -CUGGCGAa-------------GCUGCGCac-CGUUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 120296 0.7 0.862945
Target:  5'- cGGCCGCUUcCGACGagggucccucacCG-GGCGAgGACGAu -3'
miRNA:   3'- -CUGGCGAA-GCUGC------------GCaCCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 122834 0.68 0.914602
Target:  5'- cGGCCGCUgacgcggCGAcCGCGUcagacggGGCGGcGACGGg -3'
miRNA:   3'- -CUGGCGAa------GCU-GCGCA-------CCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 124230 0.67 0.943754
Target:  5'- aGGuuGgggUCGACGCGUGGCAugcuuggugucugcGGGCGc -3'
miRNA:   3'- -CUggCga-AGCUGCGCACCGU--------------UCUGCu -5'
29936 3' -55.5 NC_006273.1 + 129471 0.66 0.963894
Target:  5'- cAUCGCggCGGCgGCGUGagcGCGAGGCGu -3'
miRNA:   3'- cUGGCGaaGCUG-CGCAC---CGUUCUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.