miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 3' -55.5 NC_006273.1 + 61902 0.68 0.9331
Target:  5'- gGACCGCUUccugcgacaccagcaCGACG-GcGGCGgAGACGAg -3'
miRNA:   3'- -CUGGCGAA---------------GCUGCgCaCCGU-UCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 211291 0.69 0.903409
Target:  5'- aGGCCGCgUUgGugGCcccgGUGGCGcguGACGAu -3'
miRNA:   3'- -CUGGCG-AAgCugCG----CACCGUu--CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 106012 0.68 0.9094
Target:  5'- aACCGCUUUGGCuacggugguGUGUGGgGAGAUGc -3'
miRNA:   3'- cUGGCGAAGCUG---------CGCACCgUUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 166623 0.68 0.915169
Target:  5'- cGCCGCUUCauGAgGUG-GGC-AGGCGAa -3'
miRNA:   3'- cUGGCGAAG--CUgCGCaCCGuUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 148413 0.68 0.920713
Target:  5'- -uCgGUUUCGugGcCGUGGCAGugaccGACGAg -3'
miRNA:   3'- cuGgCGAAGCugC-GCACCGUU-----CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 101301 0.68 0.920713
Target:  5'- cGCCGgUgccccCGAgUGCGUGGCGGGAgGAg -3'
miRNA:   3'- cUGGCgAa----GCU-GCGCACCGUUCUgCU- -5'
29936 3' -55.5 NC_006273.1 + 60227 0.68 0.931126
Target:  5'- aGACCGCUacUC-ACGCGUccaccgcgacugGGCAcGGCGGg -3'
miRNA:   3'- -CUGGCGA--AGcUGCGCA------------CCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 4100 0.68 0.931126
Target:  5'- uGGCUGCUgacCGACGCGUcaggauGuGCAGGGCa- -3'
miRNA:   3'- -CUGGCGAa--GCUGCGCA------C-CGUUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 145075 0.68 0.931126
Target:  5'- aGCCGCgggCGACGCcgcUGGCGGcGGCGc -3'
miRNA:   3'- cUGGCGaa-GCUGCGc--ACCGUU-CUGCu -5'
29936 3' -55.5 NC_006273.1 + 76536 0.69 0.897198
Target:  5'- cGCCGC-UCGGCGCG-GcGCAcgaGGACGu -3'
miRNA:   3'- cUGGCGaAGCUGCGCaC-CGU---UCUGCu -5'
29936 3' -55.5 NC_006273.1 + 63745 0.69 0.884124
Target:  5'- -uCUGUUUCGgucugGCGCGUGGCcGGGCGc -3'
miRNA:   3'- cuGGCGAAGC-----UGCGCACCGuUCUGCu -5'
29936 3' -55.5 NC_006273.1 + 167267 0.69 0.877269
Target:  5'- uGACCGUggCgGugGCG-GGCAuGACGGg -3'
miRNA:   3'- -CUGGCGaaG-CugCGCaCCGUuCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 196698 0.74 0.616324
Target:  5'- uGCUGCUg-GGCGCGUGGCAGGAg-- -3'
miRNA:   3'- cUGGCGAagCUGCGCACCGUUCUgcu -5'
29936 3' -55.5 NC_006273.1 + 164236 0.74 0.636205
Target:  5'- --gCGCggCGACGgGUGGCAGGACu- -3'
miRNA:   3'- cugGCGaaGCUGCgCACCGUUCUGcu -5'
29936 3' -55.5 NC_006273.1 + 189137 0.74 0.665986
Target:  5'- uACCGUgUCGACGC-UGGCcgAGGACGAc -3'
miRNA:   3'- cUGGCGaAGCUGCGcACCG--UUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 69699 0.71 0.789494
Target:  5'- cGGCCGC--CGAuCGCGUaGGCAGcGGCGAa -3'
miRNA:   3'- -CUGGCGaaGCU-GCGCA-CCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 136765 0.7 0.840001
Target:  5'- cGACCGCgacgaggUCG-CGCGUacGGaCGAGugGAa -3'
miRNA:   3'- -CUGGCGa------AGCuGCGCA--CC-GUUCugCU- -5'
29936 3' -55.5 NC_006273.1 + 120296 0.7 0.862945
Target:  5'- cGGCCGCUUcCGACGagggucccucacCG-GGCGAgGACGAu -3'
miRNA:   3'- -CUGGCGAA-GCUGC------------GCaCCGUU-CUGCU- -5'
29936 3' -55.5 NC_006273.1 + 99819 0.69 0.870208
Target:  5'- uGCUGCUgugguugCGACG-GUGGCuGGGCGGg -3'
miRNA:   3'- cUGGCGAa------GCUGCgCACCGuUCUGCU- -5'
29936 3' -55.5 NC_006273.1 + 218180 0.69 0.870208
Target:  5'- -uUCGUcgUCGuCGCGUGGCAuGGGCGGc -3'
miRNA:   3'- cuGGCGa-AGCuGCGCACCGU-UCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.