miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 5' -50.6 NC_006273.1 + 17186 0.66 0.999586
Target:  5'- gGUCGUCCG-C-CGUCGgccgccgCCCAu-- -3'
miRNA:   3'- gCAGCAGGUaGuGCAGCaa-----GGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 216272 0.66 0.999529
Target:  5'- gCGUUGUCCAUCcACGgucugcgugguuucaUCGUuauccUCCCAu-- -3'
miRNA:   3'- -GCAGCAGGUAG-UGC---------------AGCA-----AGGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 162991 0.66 0.999488
Target:  5'- cCGUCGUCgaCGUCGcCGUCGUcacuucuuucgcUCCCu--- -3'
miRNA:   3'- -GCAGCAG--GUAGU-GCAGCA------------AGGGuuuc -5'
29936 5' -50.6 NC_006273.1 + 56465 0.66 0.999488
Target:  5'- --aCGUCCucgucaCACGUCGUUCgCGGAc -3'
miRNA:   3'- gcaGCAGGua----GUGCAGCAAGgGUUUc -5'
29936 5' -50.6 NC_006273.1 + 231001 0.66 0.99937
Target:  5'- aCGUCGUCCAgu-CGUUGUgCCgCGAu- -3'
miRNA:   3'- -GCAGCAGGUaguGCAGCAaGG-GUUuc -5'
29936 5' -50.6 NC_006273.1 + 69012 0.66 0.99937
Target:  5'- --aCGUCCAgcgcCACGUCGaUUCUCAu-- -3'
miRNA:   3'- gcaGCAGGUa---GUGCAGC-AAGGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 5554 0.66 0.999064
Target:  5'- -aUCGUCC-UCuCGcCGUUCCCGucGa -3'
miRNA:   3'- gcAGCAGGuAGuGCaGCAAGGGUuuC- -5'
29936 5' -50.6 NC_006273.1 + 50666 0.66 0.998867
Target:  5'- gCGUUGUCgGUgACGUUGguuuccUCCCAAu- -3'
miRNA:   3'- -GCAGCAGgUAgUGCAGCa-----AGGGUUuc -5'
29936 5' -50.6 NC_006273.1 + 24555 0.66 0.998867
Target:  5'- uCG-CGUCCgggcuuuccuuGUCACGUUGUcugggcgCCCGAGGu -3'
miRNA:   3'- -GCaGCAGG-----------UAGUGCAGCAa------GGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 21346 0.66 0.998867
Target:  5'- uGUCG-CCAugcuUCAUGUCG-UCCCGc-- -3'
miRNA:   3'- gCAGCaGGU----AGUGCAGCaAGGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 146112 0.67 0.998637
Target:  5'- gCGUUcUCCAcCACGUCGUcgCgCAAGGg -3'
miRNA:   3'- -GCAGcAGGUaGUGCAGCAa-GgGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 157177 0.67 0.998637
Target:  5'- uCGUCGUCCAUgACGaCGUgUCUAuAGc -3'
miRNA:   3'- -GCAGCAGGUAgUGCaGCAaGGGUuUC- -5'
29936 5' -50.6 NC_006273.1 + 139541 0.67 0.998369
Target:  5'- -cUCGUCCGcCAUGUCGgagCUCAGAa -3'
miRNA:   3'- gcAGCAGGUaGUGCAGCaa-GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 117316 0.67 0.998056
Target:  5'- gCGUCG-CCGUC-CGUUcUUCCCGcGGa -3'
miRNA:   3'- -GCAGCaGGUAGuGCAGcAAGGGUuUC- -5'
29936 5' -50.6 NC_006273.1 + 74859 0.67 0.998056
Target:  5'- uCGUCGaucaCCAgcggUCGCGUCGgcaCCGGAGa -3'
miRNA:   3'- -GCAGCa---GGU----AGUGCAGCaagGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 226314 0.67 0.998056
Target:  5'- uCGUCGUCCucGUCcucuuCGUCGUcugugCCCGucGg -3'
miRNA:   3'- -GCAGCAGG--UAGu----GCAGCAa----GGGUuuC- -5'
29936 5' -50.6 NC_006273.1 + 233171 0.67 0.99728
Target:  5'- --aCGUUCAcCGCGUCGUgCCCAGc- -3'
miRNA:   3'- gcaGCAGGUaGUGCAGCAaGGGUUuc -5'
29936 5' -50.6 NC_006273.1 + 122577 0.67 0.997236
Target:  5'- aGUUGUCCAUCuGCGccagaugguacacUCGUUUCCAc-- -3'
miRNA:   3'- gCAGCAGGUAG-UGC-------------AGCAAGGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 214142 0.68 0.996805
Target:  5'- cCGUUGUCCAaaggCGCGcCG-UCCgAAAGa -3'
miRNA:   3'- -GCAGCAGGUa---GUGCaGCaAGGgUUUC- -5'
29936 5' -50.6 NC_006273.1 + 198403 0.68 0.996263
Target:  5'- uG-CGUCCA--GCGUCGcgCCCAAGa -3'
miRNA:   3'- gCaGCAGGUagUGCAGCaaGGGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.