miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 5' -50.6 NC_006273.1 + 49550 1.09 0.017591
Target:  5'- cCGUCGUCCAUCACGUCGUUCCCAAAGc -3'
miRNA:   3'- -GCAGCAGGUAGUGCAGCAAGGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 112442 0.77 0.808978
Target:  5'- uGUCGUCCGcguuCGUCGUcCCCAGGGa -3'
miRNA:   3'- gCAGCAGGUagu-GCAGCAaGGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 47996 0.74 0.89396
Target:  5'- uCGUCGUCgGUcCACGUCGcuaaCCAGAGa -3'
miRNA:   3'- -GCAGCAGgUA-GUGCAGCaag-GGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 102965 0.74 0.89396
Target:  5'- cCGUCGUCCAUuaacaacgcCGCGUCGUgccaaCCCGGc- -3'
miRNA:   3'- -GCAGCAGGUA---------GUGCAGCAa----GGGUUuc -5'
29936 5' -50.6 NC_006273.1 + 215901 0.74 0.918441
Target:  5'- cCGUCGUcucCCAUCugGUCGggUUCGGGGa -3'
miRNA:   3'- -GCAGCA---GGUAGugCAGCaaGGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 137645 0.72 0.956155
Target:  5'- cCGUCGUCCGUCacccggGCGUCGagaugUUCgUAGAGa -3'
miRNA:   3'- -GCAGCAGGUAG------UGCAGC-----AAGgGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 232454 0.72 0.959478
Target:  5'- aCGUCGUUgAUaCACGUCGUUuuuacgguuacucCCCAGAa -3'
miRNA:   3'- -GCAGCAGgUA-GUGCAGCAA-------------GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 28368 0.72 0.959836
Target:  5'- aGUCGUCCAcgaagagguugaUCACGUCGUaggggcUCaCCAAc- -3'
miRNA:   3'- gCAGCAGGU------------AGUGCAGCA------AG-GGUUuc -5'
29936 5' -50.6 NC_006273.1 + 93253 0.71 0.966547
Target:  5'- aCGUCG-CCGUCGCGaUCGUaCUCGAAc -3'
miRNA:   3'- -GCAGCaGGUAGUGC-AGCAaGGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 32658 0.71 0.966547
Target:  5'- cCGUCGg-CGUCGCGUCGcaggCCCGAGc -3'
miRNA:   3'- -GCAGCagGUAGUGCAGCaa--GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 156398 0.7 0.983809
Target:  5'- gGUCGUCC-UUugGUUGUUCgCGGAc -3'
miRNA:   3'- gCAGCAGGuAGugCAGCAAGgGUUUc -5'
29936 5' -50.6 NC_006273.1 + 140552 0.7 0.983809
Target:  5'- gGUUGUCCuuucccCGCGUUGUUgCCCAAAc -3'
miRNA:   3'- gCAGCAGGua----GUGCAGCAA-GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 122508 0.7 0.983809
Target:  5'- aCGUCGgauacaCCGUCACGUU--UUCCAAAGc -3'
miRNA:   3'- -GCAGCa-----GGUAGUGCAGcaAGGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 141722 0.7 0.987194
Target:  5'- cCGcCG-CCAUUGCGUCG-UCCCAGcAGg -3'
miRNA:   3'- -GCaGCaGGUAGUGCAGCaAGGGUU-UC- -5'
29936 5' -50.6 NC_006273.1 + 94081 0.69 0.991216
Target:  5'- gCGUCGUUCGcugacuguaUCGgGUCuGUUCCCGAGc -3'
miRNA:   3'- -GCAGCAGGU---------AGUgCAG-CAAGGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 189460 0.69 0.993289
Target:  5'- uCGUCGUCCuccucucccUCGuCGUUGUUCUCAucGg -3'
miRNA:   3'- -GCAGCAGGu--------AGU-GCAGCAAGGGUuuC- -5'
29936 5' -50.6 NC_006273.1 + 131249 0.69 0.993289
Target:  5'- -cUCGUCCAUCgccGCGUCGggUCUCGGc- -3'
miRNA:   3'- gcAGCAGGUAG---UGCAGCa-AGGGUUuc -5'
29936 5' -50.6 NC_006273.1 + 88706 0.69 0.993289
Target:  5'- gCGUCGUUaagCGCGUCGUUaaCCCGu-- -3'
miRNA:   3'- -GCAGCAGguaGUGCAGCAA--GGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 128755 0.68 0.994168
Target:  5'- uCGUCG-CCAUUAcCGUCGccgCUCAAAGu -3'
miRNA:   3'- -GCAGCaGGUAGU-GCAGCaa-GGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 198403 0.68 0.996263
Target:  5'- uG-CGUCCA--GCGUCGcgCCCAAGa -3'
miRNA:   3'- gCaGCAGGUagUGCAGCaaGGGUUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.