Results 21 - 39 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 128755 | 0.68 | 0.994168 |
Target: 5'- uCGUCG-CCAUUAcCGUCGccgCUCAAAGu -3' miRNA: 3'- -GCAGCaGGUAGU-GCAGCaa-GGGUUUC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 189460 | 0.69 | 0.993289 |
Target: 5'- uCGUCGUCCuccucucccUCGuCGUUGUUCUCAucGg -3' miRNA: 3'- -GCAGCAGGu--------AGU-GCAGCAAGGGUuuC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 88706 | 0.69 | 0.993289 |
Target: 5'- gCGUCGUUaagCGCGUCGUUaaCCCGu-- -3' miRNA: 3'- -GCAGCAGguaGUGCAGCAA--GGGUuuc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 131249 | 0.69 | 0.993289 |
Target: 5'- -cUCGUCCAUCgccGCGUCGggUCUCGGc- -3' miRNA: 3'- gcAGCAGGUAG---UGCAGCa-AGGGUUuc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 94081 | 0.69 | 0.991216 |
Target: 5'- gCGUCGUUCGcugacuguaUCGgGUCuGUUCCCGAGc -3' miRNA: 3'- -GCAGCAGGU---------AGUgCAG-CAAGGGUUUc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 141722 | 0.7 | 0.987194 |
Target: 5'- cCGcCG-CCAUUGCGUCG-UCCCAGcAGg -3' miRNA: 3'- -GCaGCaGGUAGUGCAGCaAGGGUU-UC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 122508 | 0.7 | 0.983809 |
Target: 5'- aCGUCGgauacaCCGUCACGUU--UUCCAAAGc -3' miRNA: 3'- -GCAGCa-----GGUAGUGCAGcaAGGGUUUC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 156398 | 0.7 | 0.983809 |
Target: 5'- gGUCGUCC-UUugGUUGUUCgCGGAc -3' miRNA: 3'- gCAGCAGGuAGugCAGCAAGgGUUUc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 140552 | 0.7 | 0.983809 |
Target: 5'- gGUUGUCCuuucccCGCGUUGUUgCCCAAAc -3' miRNA: 3'- gCAGCAGGua----GUGCAGCAA-GGGUUUc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 93253 | 0.71 | 0.966547 |
Target: 5'- aCGUCG-CCGUCGCGaUCGUaCUCGAAc -3' miRNA: 3'- -GCAGCaGGUAGUGC-AGCAaGGGUUUc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 32658 | 0.71 | 0.966547 |
Target: 5'- cCGUCGg-CGUCGCGUCGcaggCCCGAGc -3' miRNA: 3'- -GCAGCagGUAGUGCAGCaa--GGGUUUc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 28368 | 0.72 | 0.959836 |
Target: 5'- aGUCGUCCAcgaagagguugaUCACGUCGUaggggcUCaCCAAc- -3' miRNA: 3'- gCAGCAGGU------------AGUGCAGCA------AG-GGUUuc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 232454 | 0.72 | 0.959478 |
Target: 5'- aCGUCGUUgAUaCACGUCGUUuuuacgguuacucCCCAGAa -3' miRNA: 3'- -GCAGCAGgUA-GUGCAGCAA-------------GGGUUUc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 137645 | 0.72 | 0.956155 |
Target: 5'- cCGUCGUCCGUCacccggGCGUCGagaugUUCgUAGAGa -3' miRNA: 3'- -GCAGCAGGUAG------UGCAGC-----AAGgGUUUC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 215901 | 0.74 | 0.918441 |
Target: 5'- cCGUCGUcucCCAUCugGUCGggUUCGGGGa -3' miRNA: 3'- -GCAGCA---GGUAGugCAGCaaGGGUUUC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 102965 | 0.74 | 0.89396 |
Target: 5'- cCGUCGUCCAUuaacaacgcCGCGUCGUgccaaCCCGGc- -3' miRNA: 3'- -GCAGCAGGUA---------GUGCAGCAa----GGGUUuc -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 47996 | 0.74 | 0.89396 |
Target: 5'- uCGUCGUCgGUcCACGUCGcuaaCCAGAGa -3' miRNA: 3'- -GCAGCAGgUA-GUGCAGCaag-GGUUUC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 112442 | 0.77 | 0.808978 |
Target: 5'- uGUCGUCCGcguuCGUCGUcCCCAGGGa -3' miRNA: 3'- gCAGCAGGUagu-GCAGCAaGGGUUUC- -5' |
|||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 49550 | 1.09 | 0.017591 |
Target: 5'- cCGUCGUCCAUCACGUCGUUCCCAAAGc -3' miRNA: 3'- -GCAGCAGGUAGUGCAGCAAGGGUUUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home