Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29936 | 5' | -50.6 | NC_006273.1 | + | 5554 | 0.66 | 0.999064 |
Target: 5'- -aUCGUCC-UCuCGcCGUUCCCGucGa -3' miRNA: 3'- gcAGCAGGuAGuGCaGCAAGGGUuuC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 17186 | 0.66 | 0.999586 |
Target: 5'- gGUCGUCCG-C-CGUCGgccgccgCCCAu-- -3' miRNA: 3'- gCAGCAGGUaGuGCAGCaa-----GGGUuuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 21346 | 0.66 | 0.998867 |
Target: 5'- uGUCG-CCAugcuUCAUGUCG-UCCCGc-- -3' miRNA: 3'- gCAGCaGGU----AGUGCAGCaAGGGUuuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 24555 | 0.66 | 0.998867 |
Target: 5'- uCG-CGUCCgggcuuuccuuGUCACGUUGUcugggcgCCCGAGGu -3' miRNA: 3'- -GCaGCAGG-----------UAGUGCAGCAa------GGGUUUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 28368 | 0.72 | 0.959836 |
Target: 5'- aGUCGUCCAcgaagagguugaUCACGUCGUaggggcUCaCCAAc- -3' miRNA: 3'- gCAGCAGGU------------AGUGCAGCA------AG-GGUUuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 32658 | 0.71 | 0.966547 |
Target: 5'- cCGUCGg-CGUCGCGUCGcaggCCCGAGc -3' miRNA: 3'- -GCAGCagGUAGUGCAGCaa--GGGUUUc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 47996 | 0.74 | 0.89396 |
Target: 5'- uCGUCGUCgGUcCACGUCGcuaaCCAGAGa -3' miRNA: 3'- -GCAGCAGgUA-GUGCAGCaag-GGUUUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 49550 | 1.09 | 0.017591 |
Target: 5'- cCGUCGUCCAUCACGUCGUUCCCAAAGc -3' miRNA: 3'- -GCAGCAGGUAGUGCAGCAAGGGUUUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 50666 | 0.66 | 0.998867 |
Target: 5'- gCGUUGUCgGUgACGUUGguuuccUCCCAAu- -3' miRNA: 3'- -GCAGCAGgUAgUGCAGCa-----AGGGUUuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 56465 | 0.66 | 0.999488 |
Target: 5'- --aCGUCCucgucaCACGUCGUUCgCGGAc -3' miRNA: 3'- gcaGCAGGua----GUGCAGCAAGgGUUUc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 69012 | 0.66 | 0.99937 |
Target: 5'- --aCGUCCAgcgcCACGUCGaUUCUCAu-- -3' miRNA: 3'- gcaGCAGGUa---GUGCAGC-AAGGGUuuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 74859 | 0.67 | 0.998056 |
Target: 5'- uCGUCGaucaCCAgcggUCGCGUCGgcaCCGGAGa -3' miRNA: 3'- -GCAGCa---GGU----AGUGCAGCaagGGUUUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 88706 | 0.69 | 0.993289 |
Target: 5'- gCGUCGUUaagCGCGUCGUUaaCCCGu-- -3' miRNA: 3'- -GCAGCAGguaGUGCAGCAA--GGGUuuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 93253 | 0.71 | 0.966547 |
Target: 5'- aCGUCG-CCGUCGCGaUCGUaCUCGAAc -3' miRNA: 3'- -GCAGCaGGUAGUGC-AGCAaGGGUUUc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 94081 | 0.69 | 0.991216 |
Target: 5'- gCGUCGUUCGcugacuguaUCGgGUCuGUUCCCGAGc -3' miRNA: 3'- -GCAGCAGGU---------AGUgCAG-CAAGGGUUUc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 102965 | 0.74 | 0.89396 |
Target: 5'- cCGUCGUCCAUuaacaacgcCGCGUCGUgccaaCCCGGc- -3' miRNA: 3'- -GCAGCAGGUA---------GUGCAGCAa----GGGUUuc -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 112442 | 0.77 | 0.808978 |
Target: 5'- uGUCGUCCGcguuCGUCGUcCCCAGGGa -3' miRNA: 3'- gCAGCAGGUagu-GCAGCAaGGGUUUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 117316 | 0.67 | 0.998056 |
Target: 5'- gCGUCG-CCGUC-CGUUcUUCCCGcGGa -3' miRNA: 3'- -GCAGCaGGUAGuGCAGcAAGGGUuUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 122508 | 0.7 | 0.983809 |
Target: 5'- aCGUCGgauacaCCGUCACGUU--UUCCAAAGc -3' miRNA: 3'- -GCAGCa-----GGUAGUGCAGcaAGGGUUUC- -5' |
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29936 | 5' | -50.6 | NC_006273.1 | + | 122577 | 0.67 | 0.997236 |
Target: 5'- aGUUGUCCAUCuGCGccagaugguacacUCGUUUCCAc-- -3' miRNA: 3'- gCAGCAGGUAG-UGC-------------AGCAAGGGUuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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