miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29936 5' -50.6 NC_006273.1 + 112442 0.77 0.808978
Target:  5'- uGUCGUCCGcguuCGUCGUcCCCAGGGa -3'
miRNA:   3'- gCAGCAGGUagu-GCAGCAaGGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 214142 0.68 0.996805
Target:  5'- cCGUUGUCCAaaggCGCGcCG-UCCgAAAGa -3'
miRNA:   3'- -GCAGCAGGUa---GUGCaGCaAGGgUUUC- -5'
29936 5' -50.6 NC_006273.1 + 74859 0.67 0.998056
Target:  5'- uCGUCGaucaCCAgcggUCGCGUCGgcaCCGGAGa -3'
miRNA:   3'- -GCAGCa---GGU----AGUGCAGCaagGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 117316 0.67 0.998056
Target:  5'- gCGUCG-CCGUC-CGUUcUUCCCGcGGa -3'
miRNA:   3'- -GCAGCaGGUAGuGCAGcAAGGGUuUC- -5'
29936 5' -50.6 NC_006273.1 + 157177 0.67 0.998637
Target:  5'- uCGUCGUCCAUgACGaCGUgUCUAuAGc -3'
miRNA:   3'- -GCAGCAGGUAgUGCaGCAaGGGUuUC- -5'
29936 5' -50.6 NC_006273.1 + 50666 0.66 0.998867
Target:  5'- gCGUUGUCgGUgACGUUGguuuccUCCCAAu- -3'
miRNA:   3'- -GCAGCAGgUAgUGCAGCa-----AGGGUUuc -5'
29936 5' -50.6 NC_006273.1 + 231001 0.66 0.99937
Target:  5'- aCGUCGUCCAgu-CGUUGUgCCgCGAu- -3'
miRNA:   3'- -GCAGCAGGUaguGCAGCAaGG-GUUuc -5'
29936 5' -50.6 NC_006273.1 + 162991 0.66 0.999488
Target:  5'- cCGUCGUCgaCGUCGcCGUCGUcacuucuuucgcUCCCu--- -3'
miRNA:   3'- -GCAGCAG--GUAGU-GCAGCA------------AGGGuuuc -5'
29936 5' -50.6 NC_006273.1 + 216272 0.66 0.999529
Target:  5'- gCGUUGUCCAUCcACGgucugcgugguuucaUCGUuauccUCCCAu-- -3'
miRNA:   3'- -GCAGCAGGUAG-UGC---------------AGCA-----AGGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 198403 0.68 0.996263
Target:  5'- uG-CGUCCA--GCGUCGcgCCCAAGa -3'
miRNA:   3'- gCaGCAGGUagUGCAGCaaGGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 131249 0.69 0.993289
Target:  5'- -cUCGUCCAUCgccGCGUCGggUCUCGGc- -3'
miRNA:   3'- gcAGCAGGUAG---UGCAGCa-AGGGUUuc -5'
29936 5' -50.6 NC_006273.1 + 215901 0.74 0.918441
Target:  5'- cCGUCGUcucCCAUCugGUCGggUUCGGGGa -3'
miRNA:   3'- -GCAGCA---GGUAGugCAGCaaGGGUUUC- -5'
29936 5' -50.6 NC_006273.1 + 232454 0.72 0.959478
Target:  5'- aCGUCGUUgAUaCACGUCGUUuuuacgguuacucCCCAGAa -3'
miRNA:   3'- -GCAGCAGgUA-GUGCAGCAA-------------GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 28368 0.72 0.959836
Target:  5'- aGUCGUCCAcgaagagguugaUCACGUCGUaggggcUCaCCAAc- -3'
miRNA:   3'- gCAGCAGGU------------AGUGCAGCA------AG-GGUUuc -5'
29936 5' -50.6 NC_006273.1 + 32658 0.71 0.966547
Target:  5'- cCGUCGg-CGUCGCGUCGcaggCCCGAGc -3'
miRNA:   3'- -GCAGCagGUAGUGCAGCaa--GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 140552 0.7 0.983809
Target:  5'- gGUUGUCCuuucccCGCGUUGUUgCCCAAAc -3'
miRNA:   3'- gCAGCAGGua----GUGCAGCAA-GGGUUUc -5'
29936 5' -50.6 NC_006273.1 + 156398 0.7 0.983809
Target:  5'- gGUCGUCC-UUugGUUGUUCgCGGAc -3'
miRNA:   3'- gCAGCAGGuAGugCAGCAAGgGUUUc -5'
29936 5' -50.6 NC_006273.1 + 141722 0.7 0.987194
Target:  5'- cCGcCG-CCAUUGCGUCG-UCCCAGcAGg -3'
miRNA:   3'- -GCaGCaGGUAGUGCAGCaAGGGUU-UC- -5'
29936 5' -50.6 NC_006273.1 + 88706 0.69 0.993289
Target:  5'- gCGUCGUUaagCGCGUCGUUaaCCCGu-- -3'
miRNA:   3'- -GCAGCAGguaGUGCAGCAA--GGGUuuc -5'
29936 5' -50.6 NC_006273.1 + 17186 0.66 0.999586
Target:  5'- gGUCGUCCG-C-CGUCGgccgccgCCCAu-- -3'
miRNA:   3'- gCAGCAGGUaGuGCAGCaa-----GGGUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.