miRNA display CGI


Results 1 - 20 of 253 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29937 3' -62.9 NC_006273.1 + 17955 0.65 0.774621
Target:  5'- aUCUGCGCCauacgauccuCCGGCGCUgaGAaccuacgugcagCGCCa -3'
miRNA:   3'- -GGGCGCGGc---------GGCCGCGAgaCUa-----------GCGG- -5'
29937 3' -62.9 NC_006273.1 + 144416 0.66 0.767739
Target:  5'- gCCCgGCGCCGCggCGGCGgaCgguucgGGUgGCg -3'
miRNA:   3'- -GGG-CGCGGCG--GCCGCgaGa-----CUAgCGg -5'
29937 3' -62.9 NC_006273.1 + 232980 0.66 0.767739
Target:  5'- gCCGCGCgGCCucGGCGgCg--GG-CGCCg -3'
miRNA:   3'- gGGCGCGgCGG--CCGC-GagaCUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 44908 0.66 0.767739
Target:  5'- cCCUGCgcgccacaacGCCGuCCGGCGCaacuUCUGucUCGgCa -3'
miRNA:   3'- -GGGCG----------CGGC-GGCCGCG----AGACu-AGCgG- -5'
29937 3' -62.9 NC_006273.1 + 234839 0.66 0.767739
Target:  5'- uCCCGCaCCGgCGGCGgUCgGGgugUGUCg -3'
miRNA:   3'- -GGGCGcGGCgGCCGCgAGaCUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 194901 0.66 0.767739
Target:  5'- uCCCGCaCCGgCGGCGgUCgGGgugUGUCg -3'
miRNA:   3'- -GGGCGcGGCgGCCGCgAGaCUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 8 0.66 0.767739
Target:  5'- uCCCGCaCCGgCGGCGgUCgGGgugUGUCg -3'
miRNA:   3'- -GGGCGcGGCgGCCGCgAGaCUa--GCGG- -5'
29937 3' -62.9 NC_006273.1 + 16641 0.66 0.767739
Target:  5'- aCUGCguuGCCGCUGGUaCcugCUGggCGCCg -3'
miRNA:   3'- gGGCG---CGGCGGCCGcGa--GACuaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 38087 0.66 0.767739
Target:  5'- gCCGCGCgGCCucGGCGgCg--GG-CGCCg -3'
miRNA:   3'- gGGCGCGgCGG--CCGC-GagaCUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 167960 0.66 0.767739
Target:  5'- aCCGUGagcuUGCCGGC-CUCUucUUGCCa -3'
miRNA:   3'- gGGCGCg---GCGGCCGcGAGAcuAGCGG- -5'
29937 3' -62.9 NC_006273.1 + 83682 0.66 0.766874
Target:  5'- uUCCGU-CCGCUGGCGgUggaggacaaccgcCUGGUgGCCa -3'
miRNA:   3'- -GGGCGcGGCGGCCGCgA-------------GACUAgCGG- -5'
29937 3' -62.9 NC_006273.1 + 44451 0.66 0.766874
Target:  5'- uUCCGCGgccaguugcuggaCCGCC-GCGCUUUccugaGAUCGCa -3'
miRNA:   3'- -GGGCGC-------------GGCGGcCGCGAGA-----CUAGCGg -5'
29937 3' -62.9 NC_006273.1 + 4961 0.66 0.762534
Target:  5'- gCCaaGUGCCGaCGGCGCUUUGGcuuuauguucaacguUCaGCCa -3'
miRNA:   3'- gGG--CGCGGCgGCCGCGAGACU---------------AG-CGG- -5'
29937 3' -62.9 NC_006273.1 + 4982 0.66 0.762534
Target:  5'- cCCUGCGUuuuauaugguagcucUGCCGaGCGCgggCUGA-CGCg -3'
miRNA:   3'- -GGGCGCG---------------GCGGC-CGCGa--GACUaGCGg -5'
29937 3' -62.9 NC_006273.1 + 57863 0.66 0.759045
Target:  5'- aCCaCGUucaacGCCGCCGGUug-CUGG-CGCCa -3'
miRNA:   3'- -GG-GCG-----CGGCGGCCGcgaGACUaGCGG- -5'
29937 3' -62.9 NC_006273.1 + 156692 0.66 0.759045
Target:  5'- aCCGCGCCuCCGGCgGCggUGccCGCg -3'
miRNA:   3'- gGGCGCGGcGGCCG-CGagACuaGCGg -5'
29937 3' -62.9 NC_006273.1 + 40702 0.66 0.759045
Target:  5'- -gCGUGCUGuguCCGGCGCUUUGugcgcacUGCCg -3'
miRNA:   3'- ggGCGCGGC---GGCCGCGAGACua-----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 26353 0.66 0.759045
Target:  5'- aUCGCuGUgGCCGGC-UUCUGAUaUGCCc -3'
miRNA:   3'- gGGCG-CGgCGGCCGcGAGACUA-GCGG- -5'
29937 3' -62.9 NC_006273.1 + 764 0.66 0.759045
Target:  5'- -gCGUGCUGuguCCGGCGCUUUGugcgcacUGCCg -3'
miRNA:   3'- ggGCGCGGC---GGCCGCGAGACua-----GCGG- -5'
29937 3' -62.9 NC_006273.1 + 35974 0.66 0.759045
Target:  5'- gCUCGCGCgGCUucgGGCGCUUgugGGUCcagGCa -3'
miRNA:   3'- -GGGCGCGgCGG---CCGCGAGa--CUAG---CGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.